PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G300300.1.p
Common NameGLYMA_06G300300, LOC100777621
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 231aa    MW: 26587.6 Da    PI: 6.3974
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G300300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.1e-171562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g WT+eEd++lv++++++G  +W++ ++  g+ R++k+c++rw++yl
  Glyma.06G300300.1.p 15 KGTWTPEEDKKLVEYITRYGHWNWRLLPKFAGLARCGKSCRLRWLNYL 62
                         799*****************99************************97 PP
2Myb_DNA-binding59.76.3e-1968112147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg+ T+eE+e ++++++ lG++ W++Ia++m+ gRt++++k++w++ 
  Glyma.06G300300.1.p  68 RGNYTKEEEETIIKLHRHLGNR-WSAIAARMP-GRTDNEIKNHWHTN 112
                          899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.2171062IPR017930Myb domain
SuperFamilySSF466891.51E-2912109IPR009057Homeodomain-like
SMARTSM007172.7E-111464IPR001005SANT/Myb domain
PfamPF002495.6E-151562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-231669IPR009057Homeodomain-like
CDDcd001671.76E-91762No hitNo description
PROSITE profilePS5129426.60763117IPR017930Myb domain
SMARTSM007171.4E-1767115IPR001005SANT/Myb domain
PfamPF002493.3E-1768112IPR001005SANT/Myb domain
CDDcd001672.88E-1270113No hitNo description
Gene3DG3DSA:1.10.10.605.1E-2570116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MMVRTPSCDK NGVKKGTWTP EEDKKLVEYI TRYGHWNWRL LPKFAGLARC GKSCRLRWLN  60
YLRPNLKRGN YTKEEEETII KLHRHLGNRW SAIAARMPGR TDNEIKNHWH TNLKKRSQQD  120
SVATESIVSN SNDQSPTEQP TANTTFQSFN STTQDCSPLS QHSSPSTSTV VSTENLVLME  180
DEFAFWDSDT DLMSGNFWLE PYMLDISYVP ASEPEYSSQV FDVELWSHDT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29151167107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G300300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150393e-39AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003526305.21e-174transcription factor MYB14
TrEMBLK7KY791e-173K7KY79_SOYBN; Uncharacterized protein
STRINGGLYMA06G45554.11e-173(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-61myb domain protein 14