PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G012200.1.p
Common NameGLYMA_07G012200, LOC102668090
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 243aa    MW: 26640.9 Da    PI: 9.57
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G012200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000123253223
                         EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                          C++C+k Fs+   L  H++ H
  Glyma.07G012200.1.p 32 ICKYCNKKFSNYQALGGHQNAH 53
                         6*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.993158IPR007087Zinc finger, C2H2
SuperFamilySSF576671.03E-53158No hitNo description
PfamPF139121.4E-63255IPR007087Zinc finger, C2H2
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MESNVEAESN HGKVSASAST SNKSPPMKND LICKYCNKKF SNYQALGGHQ NAHKEERAAA  60
QKEKILNMAS AYNKNSYVGG FVNSNQSYGF GGKTLGVSPL SMTRFKPHYY SNWPHMSHVA  120
WPRHQILNSV QPTIHQLQTL MMADQGSGFY QHHKSYQPLA FPILREGAVI NSGSQSQLLL  180
NPSLCYKGNN FGQASNSSII PQNKIIEGSD DLNIKISGEA KNSFSSMPSN GDVKELDLTL  240
KI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G012200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2359040.0AC235904.2 Glycine max clone GM_WBc0179J02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006584153.10.0zinc finger protein 3
RefseqXP_028240650.10.0zinc finger protein 3-like
TrEMBLA0A0R0J4Q01e-179A0A0R0J4Q0_SOYBN; Uncharacterized protein
TrEMBLA0A445JQK41e-179A0A445JQK4_GLYSO; Uncharacterized protein
STRINGXP_007135583.13e-79(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1669724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.13e-10C2H2 family protein