PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G016500.1.p
Common NameGLYMA_07G016500, LOC100819365
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 839aa    MW: 92450.7 Da    PI: 6.469
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G016500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72.1e-181775357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Glyma.07G016500.1.p 17 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                         5679*****************************************************97 PP
2START181.45.2e-571623702205
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d + W ++++++++l+v+ ++  g
  Glyma.07G016500.1.p 162 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDQPLWFRDCRAVDVLNVLPTAngG 250
                          7899******************************************************.9999999999****************9999* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +++l +++l+a+++l+p Rdf+ +Ry+  l++g++vi+++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ +
  Glyma.07G016500.1.p 251 TIELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVICERSLKNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPW 340
                          ************************************************9988899*********************************** PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqce 205
                          +++++lr+l++s+++ ++kt++a+l+++++
  Glyma.07G016500.1.p 341 SVPEVLRPLYESSTVLAQKTTMAALRHLRQ 370
                          *************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5641276IPR001356Homeobox domain
SMARTSM003891.1E-151480IPR001356Homeobox domain
SuperFamilySSF466891.41E-161678IPR009057Homeodomain-like
CDDcd000861.31E-161777No hitNo description
PfamPF000465.8E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-181975IPR009057Homeodomain-like
CDDcd146862.37E-669108No hitNo description
PROSITE profilePS5084825.143152366IPR002913START domain
CDDcd088752.24E-80156371No hitNo description
Gene3DG3DSA:3.30.530.205.7E-23161367IPR023393START-like domain
SuperFamilySSF559615.36E-38161371No hitNo description
SMARTSM002342.6E-42161371IPR002913START domain
PfamPF018521.5E-54162370IPR002913START domain
SuperFamilySSF559614.62E-5398492No hitNo description
SuperFamilySSF559614.62E-5522597No hitNo description
PfamPF086703.4E-50695837IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MSCKDGSRNG IGMDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKESS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYFRQH  120
TQITTQATKD TNCESVVTSG QQHNLITQHP PRDASPAGLL SIAEETLAEF LSKATGTAVE  180
WVQMPGMKPG PDSIGIVAIS HGCTGVAARA CGLVGLEPTR VAEILKDQPL WFRDCRAVDV  240
LNVLPTANGG TIELLYMQLY APTTLAPARD FWLLRYTSVL EDGSLVICER SLKNTQNGPS  300
MPPVQHFVRA EMLPSGYLIR PCEGGGSIIH IVDHMDLEPW SVPEVLRPLY ESSTVLAQKT  360
TMAALRHLRQ ISHEVSQSNV TGWGRRPAAL RALSQRLSRG FNEALNGFTD EGWTTIGNDG  420
VDDVTILVNS SPDKLMGLNL SFANGFPSVS NAVLCAKASM LLQNVPPAIL LRFLREHRSE  480
WADNNMDAYT AAAIKVGPCS LSGSRVGNYG GQVILPLAHT IEHEEFLEVI KLEGIAHSPE  540
DTIMPREMFL LQLCSGMDEN AVGTCAELIS APIDASFADD APLLPSGFRI IPLESGKEAS  600
SPNRTLDLAS ALDVGPSGNR ASNGCANSSC MRSVMTIAFE FAFESHMQEH VASMARQYVR  660
SIISSVQRVA LALSPSHLSS HAGLRSPLGT PEAQTLAHWI CNSYRCYLGV ELLKSNNEGN  720
ESLLKSLWHH SDAILCCTLK ALPVFTFSNQ AGLDMLETTL VALQDITLEK IFDDHGRKIL  780
FSEFPQIIQQ GFACLQGGIC LSSMGRPVSY ERVVAWKVLN EEENAHCICF MFVNWSFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.615250.0epicotyl| leaf| root| seed coat| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269|PubMed:14701930, ECO:0000269|PubMed:15705957}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G016500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003530109.10.0homeobox-leucine zipper protein ATHB-15
RefseqXP_028238900.10.0homeobox-leucine zipper protein ATHB-15-like
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A445JQZ30.0A0A445JQZ3_GLYSO; Homeobox-leucine zipper protein ATHB-15 isoform D
STRINGGLYMA07G01940.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]