PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G018500.1.p
Common NameGLYMA_07G018500, LOC100802121
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 320aa    MW: 35135.1 Da    PI: 7.7559
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G018500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.00041842221255
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Glyma.07G018500.1.p 184 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 222
                          6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.706172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-10182233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.68E-6182226No hitNo description
Gene3DG3DSA:4.10.280.104.3E-7186229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MMAGNPNWWT MHPPSLIPPQ YVLGSSSIPF NSSTQNQEPP HSLSQLLFTG LPGEEERVAF  60
SHFQSKKLDE WNEQMLNPSS IVPMADVIKQ EVSQSGNLYH HGHDQEFQVS GAPWSHMVPV  120
SSSPRSSVAS FSSNNLLDFT YNKTDHRKNQ LPDHTSECNS TATGGVYKKT KSQPSSSQPP  180
LKVRKEKLGD RITALHQLVS PFGKTDTASV LLEAIGYIRF LQGQIEALSS PYLGNGSKNM  240
RNPQSQQVHG ERNSVFPEDP GQLLNDNGLK RKGAPNQDAK DKPRDLKSRG LCLVPVSCTQ  300
HVGNENGADY WAPAYGSGF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.36090.0cotyledon| flower| leaf| meristem| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G018500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150429e-99AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583061.10.0transcription factor bHLH68 isoform X1
RefseqXP_006583062.10.0transcription factor bHLH68 isoform X1
RefseqXP_014633137.10.0transcription factor bHLH68 isoform X1
RefseqXP_028238921.10.0transcription factor bHLH68-like isoform X1
RefseqXP_028238922.10.0transcription factor bHLH68-like isoform X1
SwissprotQ8S3D19e-68BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A445JQZ20.0A0A445JQZ2_GLYSO; Transcription factor bHLH68 isoform A
TrEMBLI1KGL70.0I1KGL7_SOYBN; Uncharacterized protein
STRINGGLYMA07G02120.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Representative plantOGRP3780714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.15e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]