PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G025300.1.p
Common NameGLYMA_07G025300, LOC100816861
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 262aa    MW: 29233.5 Da    PI: 7.5279
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G025300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00021104126123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C + F ++  L  H++ H
  Glyma.07G025300.1.p 104 FSCNYCQRKFYSSQALGGHQNAH 126
                          89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.55E-6101131No hitNo description
PROSITE profilePS5015711.427104131IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDLQRQESCP SENLNIITFS DTVPCQNPEP SINTQTKTNQ TQTEDQKHPH DSVPRVLLDL  60
SLSNKDSSDD DSKSELNLLN CFHTNFSENT SESSQGNELD PRVFSCNYCQ RKFYSSQALG  120
GHQNAHKRER TLARRGYKAG VADFGHTYSN MHFLPSHDLY NKALGIQVHS MINKPSYQTP  180
IFGPCRSIGW QRQPLDAQPA IGNFRVGAET ESSLADSVPK LGKFSTRLVT EGFGGYCFGS  240
ITNLKSKQQE KLQKLDLSLK L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G025300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529781.10.0zinc finger protein 3
TrEMBLK7KZ920.0K7KZ92_SOYBN; Uncharacterized protein
STRINGGLYMA07G02880.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.11e-31zinc finger protein 3