PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G027300.1.p
Common NameGLYMA_07G027300, LOC100778916
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 270aa    MW: 30565.2 Da    PI: 8.9152
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G027300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.7e-12107152555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h + Er+RR++i ++f  L   +P +     kK++Ka++L++A +Y+++Lq
  Glyma.07G027300.1.p 107 HVMSERKRRQDIAEKFIALSATIPGL-----KKVDKATVLREALNYMRQLQ 152
                          8899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.907102151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-15104162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.70E-10107156No hitNo description
Gene3DG3DSA:4.10.280.108.4E-15107161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-10107152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-12108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MLSSLPDMME DSWENWLSHL GMNDDFSCTN AVSSEEMVRL NNDSSNVVAA IGPKVEYTDS  60
YLKSSEEKLG SCYWRKRGVE NHELEAKARD NERGTKRART SSETQYHVMS ERKRRQDIAE  120
KFIALSATIP GLKKVDKATV LREALNYMRQ LQQRIAVLEK GSNNKSIKSL IITKSRLCSA  180
SCETNSNEVL PQVEARGLEK EVLIRIYCEK RKDIMLKLLA LLKDVHLSIA SSSILQFGNS  240
ILNIIIIAQM SEKYNLTVND LVKTLKQIF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110115ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G027300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150423e-52AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529791.20.0transcription factor bHLH25
RefseqXP_028240821.10.0transcription factor bHLH25-like
TrEMBLA0A445JRD10.0A0A445JRD1_GLYSO; Transcription factor bHLH25
TrEMBLK7KZB50.0K7KZB5_SOYBN; Uncharacterized protein
STRINGGLYMA07G03081.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14964813
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-41bHLH family protein