PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G048100.1.p
Common NameGLYMA_07G048100, LOC100786383
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 309aa    MW: 34914.3 Da    PI: 5.2502
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G048100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM126.32.4e-3961383128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                          +G+ F+Pt+eelv++yLk+ + g++ ++ +vi+ +d+++vePwd p        +++ ++  w+fFs+ d ky+++kr nr+tk g+Wka
  Glyma.07G048100.1.p   6 VGLGFRPTEEELVDFYLKHMLLGNDPRA-HVIPVIDLCDVEPWDVPVmlaksssAIRFGDPYWFFFSPVDFKYSRSKRFNRTTKCGFWKA 94 
                          6999*********************998.99***************536655544444888***************************** PP

                  NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          tgkd+++ +  +++++g+kktLv+y+gr + g+k++Wv+hey++
  Glyma.07G048100.1.p  95 TGKDRDIRTGdTNTVIGTKKTLVYYQGRVSCGVKSNWVIHEYHA 138
                          ********98566779**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100542.4444156IPR003441NAC domain
SuperFamilySSF1019411.7E-436156IPR003441NAC domain
PfamPF023653.8E-226137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDDDIVGLGF RPTEEELVDF YLKHMLLGND PRAHVIPVID LCDVEPWDVP VMLAKSSSAI  60
RFGDPYWFFF SPVDFKYSRS KRFNRTTKCG FWKATGKDRD IRTGDTNTVI GTKKTLVYYQ  120
GRVSCGVKSN WVIHEYHAVT FHESQRTFVL CCLIKKPGKA TEGGTDALIC DEGEPSRSMV  180
SDFENQATAE GIPSEGTFTG METIFQATPW AENCFSPIQQ SPTSIEQEGA SFPNYAFNNA  240
YFRNEDNVMR NPFETTKEDE FLNSILAGES IVINEENKHN FVHSSTQSES LKTILLKTRQ  300
LRMMGTKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-26716220171NO APICAL MERISTEM PROTEIN
1ut4_B8e-26716220171NO APICAL MERISTEM PROTEIN
1ut7_A8e-26716220171NO APICAL MERISTEM PROTEIN
1ut7_B8e-26716220171NO APICAL MERISTEM PROTEIN
3swm_A9e-26716223174NAC domain-containing protein 19
3swm_B9e-26716223174NAC domain-containing protein 19
3swm_C9e-26716223174NAC domain-containing protein 19
3swm_D9e-26716223174NAC domain-containing protein 19
3swp_A9e-26716223174NAC domain-containing protein 19
3swp_B9e-26716223174NAC domain-containing protein 19
3swp_C9e-26716223174NAC domain-containing protein 19
3swp_D9e-26716223174NAC domain-containing protein 19
4dul_A8e-26716220171NAC domain-containing protein 19
4dul_B8e-26716220171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.45540.0root| seed coat| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G048100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528755.10.0NAC domain-containing protein 91
TrEMBLI1KHM30.0I1KHM3_SOYBN; Uncharacterized protein
STRINGGLYMA07G05370.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Representative plantOGRP9281314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.14e-42NAC domain containing protein 62