PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G052100.1.p
Common NameGlyma07g05800.1, LOC100797862
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 239aa    MW: 27335.2 Da    PI: 4.8623
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G052100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.46e-193283556
                         SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         ++f++eq++ Le++Fe+++ +  +++ +LA++lgL+ rqV +WFqN+Ra++k
  Glyma.07G052100.1.p 32 RRFSDEQIKSLETMFESESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWK 83
                         58*************************************************9 PP
2HD-ZIP_I/II1201.2e-3831121393
          HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                           rr+s+eq+k+LE++Fe+e++Lep++K +lareLglqprqva+WFqn+RAR+k+kqlE+dy  L+++y++l+++ e+L+ke+++L  +l+
  Glyma.07G052100.1.p  31 TRRFSDEQIKSLETMFESESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKENQTLLIQLQ 120
                          79***********************************************************************************99998 PP

          HD-ZIP_I/II  93 e 93 
                          +
  Glyma.07G052100.1.p 121 K 121
                          6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.39E-181487IPR009057Homeodomain-like
SMARTSM003894.5E-152389IPR001356Homeobox domain
PROSITE profilePS5007117.5082585IPR001356Homeobox domain
CDDcd000861.30E-143286No hitNo description
Gene3DG3DSA:1.10.10.602.2E-193292IPR009057Homeodomain-like
PfamPF000462.2E-163283IPR001356Homeobox domain
PRINTSPR000319.6E-65665IPR000047Helix-turn-helix motif
PROSITE patternPS0002706083IPR017970Homeobox, conserved site
PRINTSPR000319.6E-66581IPR000047Helix-turn-helix motif
PfamPF021835.5E-1785127IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MEYTYSAGVE AETHTSSSTT PSRSKKRNNN TRRFSDEQIK SLETMFESES RLEPRKKLQL  60
ARELGLQPRQ VAIWFQNKRA RWKSKQLERD YGILQSNYNS LASRFEALKK ENQTLLIQLQ  120
KLNHLMQKPM EPGQRCTQVE AANSMDSESE NGGTMKCEAE GKPSPSMEIS EHLLGVLSDD  180
DTSIKVEDFG LEDEHGLLNF AKHVDGSLTS PEDWNAFESN DLLGQSTTDD YQWWDFWS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.205790.0leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G052100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311750.0KT031175.1 Glycine max clone HN_WYQ_3 homeodomain/HOMEOBOX transcription factor (Glyma07g05800.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001341790.11e-178homeodomain/HOMEOBOX transcription factor
RefseqXP_028239346.11e-178homeobox-leucine zipper protein ATHB-12-like
SwissprotP468976e-61ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A0K2CTA91e-177A0A0K2CTA9_SOYBN; Homeodomain/HOMEOBOX transcription factor (Fragment)
TrEMBLA0A445JSM91e-177A0A445JSM9_GLYSO; Homeobox-leucine zipper protein ATHB-7
TrEMBLI1KHS01e-177I1KHS0_SOYBN; Uncharacterized protein
STRINGGLYMA07G05800.11e-178(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.12e-60homeobox 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]
  3. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]