PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G054800.2.p
Common NameGLYMA_07G054800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 685aa    MW: 76242.9 Da    PI: 6.621
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G054800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82.1e-23104204198
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++ +k+a+e+       +  ++ +++l  +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +vF 
  Glyma.07G054800.2.p 104 FCKILTASDTSTHGGFSVLRKHATEClpeldmtQ--STPTQELAAKDLHGFEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFL 191
                          99**************************999644..444569************************************************ PP

                          E-SSSEE..EEEEE- CS
                   B3  84 ldgrsefelvvkvfr 98 
                            + + ++l+v+v+r
  Glyma.07G054800.2.p 192 --RGEHGQLRVGVRR 204
                          ..4489999****98 PP
2Auxin_resp97.32.3e-32230309183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          a+ha+ t+++F v+Y+Pr+  s+F+v ++k+++a+++k+s+ mRfkm+fe++ds+err+sGt+vgv d++   W+nS+WrsLk
  Glyma.07G054800.2.p 230 ASHAVMTRTMFLVYYKPRT--SQFIVGLNKYLEAVNNKFSLSMRFKMRFEGDDSPERRFSGTIVGVGDVSA-GWSNSQWRSLK 309
                          689***************6..9**********************************************777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.19E-4194233IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-4095219IPR015300DNA-binding pseudobarrel domain
CDDcd100174.51E-19102204No hitNo description
SMARTSM010198.8E-21104206IPR003340B3 DNA binding domain
PfamPF023622.6E-21104204IPR003340B3 DNA binding domain
PROSITE profilePS5086311.589104206IPR003340B3 DNA binding domain
PfamPF065079.8E-31230309IPR010525Auxin response factor
PfamPF023093.9E-5555600IPR033389AUX/IAA domain
SuperFamilySSF542773.79E-12558640No hitNo description
PROSITE profilePS5174525.929564645IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MMICIESCGS YVQGHWWMFL VMGTEFSTSL KLQASTDQEL NQEIPHFNLP AKIFCRVVNI  60
QLLAEQDTDE VYACIALLPE SDQTEPTNPD PNVSEAPKQK FHSFCKILTA SDTSTHGGFS  120
VLRKHATECL PELDMTQSTP TQELAAKDLH GFEWKFKHIY RGQPRRHLLT TGWSTFVASK  180
RLVAGDAFVF LRGEHGQLRV GVRRLARQQS PMPSSVISSQ SMHLGVLATA SHAVMTRTMF  240
LVYYKPRTSQ FIVGLNKYLE AVNNKFSLSM RFKMRFEGDD SPERRFSGTI VGVGDVSAGW  300
SNSQWRSLKV QWDEPATIPR PDRVSCWEIE PFVASTALNV TQPAVKGKRS RPADVLSSGF  360
WYHGSSNELS QLGAAAEVQS KENQVVPCSL RQKDIINSNP INANNSSIST RVRMEGVWPS  420
SPHLNATPNL FSDPNNNNSN NGVSARSLIS GYPNVPSRSS DGPTCDGVED GKKTENSLDC  480
WLFGVNLTNN CSNVITTPSE REQRGPSSSV VLSGPKESIP AAACETERVQ TPNYSLSNKG  540
QKQIISEASP NQWQNKQATV LSMRTRTKVQ MQGVAVGRAF DLTTLSGYDD LIDELEKLFE  600
IRGELRSQDK WAVTFTDDEN DMMLAGDDPW PEFCNMVKRI FICSREDLKK MKCCKLPASS  660
SEVEEILLSP DSQNRDETQQ SHMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1453133251355Auxin response factor 1
4ldw_A1e-1453133251355Auxin response factor 1
4ldw_B1e-1453133251355Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.277380.0leaf
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G054800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583222.10.0auxin response factor 18 isoform X2
RefseqXP_028239379.10.0auxin response factor 18-like isoform X2
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLA0A0R0J0I00.0A0A0R0J0I0_SOYBN; Auxin response factor
STRINGGLYMA07G06060.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.31e-174auxin response factor 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]