PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.07G083500.3.p

Common Name

GLYMA_07G083500

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 252aa MW: 27180.5 Da PI: 7.3712

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G083500.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.8	0.00046	116	154	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Glyma.07G083500.3.p 116 RKEKLGERITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 154 5667778888888888887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.28	104	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-10	114	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.26E-6	114	158	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.8E-7	114	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045944	Biological Process	positive regulation of transcription from RNA polymerase II promoter
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0001228	Molecular Function	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MGQFIQTKKL ESWEDQMLGQ APNASLVDVK QENLVNSYAY GHGSEELQSS KPSWSPKSCV 60 TTSFSSNMLD FSNNKTDARH PPPDLSSECN STAAGGALKK ARVQPSATTQ TTFKVRKEKL 120 GERITALHQL VSPFGKTDTA SVLLEAIGYI RFLQSQIEAL SLPYLSGGSG NTRQQHSVQG 180 EKTCIFPEDP GQLLDENCLK RKAAGEPDTQ EEPKKGLRSR GLCLVPVSCT LQVGSDNGAD 240 YWAPALGGGF R*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.32075	0.0	cotyledon\| epicotyl\| hypocotyl\| leaf\| meristem\| root\| somatic embryo\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G083500.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093872	0.0	BT093872.1 Soybean clone JCVI-FLGm-24O24 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001240881.1	0.0	uncharacterized protein LOC100786555
Swissprot	Q8S3D1	1e-89	BH068_ARATH; Transcription factor bHLH68
TrEMBL	I1KIN1	0.0	I1KIN1_SOYBN; Uncharacterized protein
STRING	GLYMA07G09180.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	5e-92	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.07G083500.3.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]