PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G085300.2.p
Common NameGLYMA_07G085300, LOC100818116
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CPP
Protein Properties Length: 560aa    MW: 60182.1 Da    PI: 7.1162
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G085300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.91.1e-1490129242
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                          ++k+CnCk+skClk+YCeCfa+g +C+  C+C +C+N+ e+
  Glyma.07G085300.2.p  90 KQKQCNCKHSKCLKLYCECFASGIYCDG-CNCVNCFNNVEN 129
                          89**************************.********9875 PP
2TCR512.9e-16174213140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Glyma.07G085300.2.p 174 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 213
                          589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.2E-1789129IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.13890214IPR005172CRC domain
PfamPF036382.8E-1191126IPR005172CRC domain
SMARTSM011148.4E-20174215IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12177212IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MGEGEGGGDC VQKNASLSEV VAPSAASLEV PAKKLARQLD FTGAPEHPPQ LPVAVLPLPL  60
QAPPARVGKP ESPKSRSRPN FEMKDATPKK QKQCNCKHSK CLKLYCECFA SGIYCDGCNC  120
VNCFNNVENE AARREAVEAT LERNPNAFRP KIASSPHGTR DSREDAGEVL ILGKHNKGCH  180
CKKSGCLKKY CECFQANILC SENCKCMDCK NFEGSEERQA LFHGDQNNMA YIQQAANAAI  240
TGAIGSSGYS SPPVSKKRKG QELFFWPTTK DPSISKLGQQ VNHVRGPAPS SSLSPVSGAR  300
VGTATLGPSK FMYRSLLADI IQPQHLKELC SVLVLVSGQA AKTLTDQKIL MEKQAEDQTE  360
TSLASSSQEQ LPSQKEGHIE KTVADDCSSA NQTDKISPDN SSSDGADVPK GRPMSPGTLA  420
LMCDEQDTMF MTTASPIAPM AHACNTSSQF PYGQGMTEVY PEQERIVLTK FRDFLNRVIT  480
MGEINETKCS SLTRNELESQ KDPIINGIGN ASSEIVLQQG ATSNGVTKPG SPLVTTSTSM  540
IPGNIAENGE TKVKIEKEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-32822232132Protein lin-54 homolog
5fd3_B3e-32822232132Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.451860.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G085300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-179AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529992.10.0protein tesmin/TSO1-like CXC 5 isoform X1
RefseqXP_028239774.10.0protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A445JU560.0A0A445JU56_GLYSO; Protein tesmin/TSO1-like CXC 5
TrEMBLK7L0G10.0K7L0G1_SOYBN; Uncharacterized protein
STRINGGLYMA07G09380.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-174Tesmin/TSO1-like CXC domain-containing protein