PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.07G091600.1.p

Common Name

GLYMA_07G091600, LOC100802646

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 233aa MW: 24866.3 Da PI: 8.9741

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G091600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	81.2	1.6e-25	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlrr+C+++C+++ + p++q++++ +++k++G++ +l ll+++p + ++++++sl+yeA+ r+ +Pv G++g+++++++ Glyma.07G091600.1.p 4 SCNGCRVLRRGCTTECPIRISLqwinsPNSQSNATLFLAKFYGRQGLLTLLTNAPSQLQQAVLKSLLYEACGRIVNPVLGSTGLLSTGNW 93 6*************************************************************************************** PP DUF260 86 qleqlkaelallke 99 +l++++++++l ++ Glyma.07G091600.1.p 94 HLCEAAVKAVLNGA 107 ***999887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	14.66	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-21	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MRLSCNGCRV LRRGCTTECP IRISLQWINS PNSQSNATLF LAKFYGRQGL LTLLTNAPSQ 60 LQQAVLKSLL YEACGRIVNP VLGSTGLLST GNWHLCEAAV KAVLNGAPIE QAPLDGATSL 120 QLKACNIRHV AKSDKSCGSD TLRKVKSRTT TFKRRAAKSR VESVVAELAE SELDGHGSMS 180 HDSGSGVTRM SENKIVGGEA DSDSVQSVGP ARADGEEMEL QLTLGWGPLK RQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.27254	0.0	cotyledon\| root\| somatic embryo

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G091600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001340931.1	1e-170	LBD domain-containing transcription factor
TrEMBL	I1KIX1	1e-169	I1KIX1_SOYBN; Uncharacterized protein
STRING	GLYMA07G10180.1	1e-170	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF18189	4	4
Representative plant	OGRP403	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68510.1	1e-57	LOB domain-containing protein 42

Link Out ? help Back to Top
Phytozome	Glyma.07G091600.1.p
Entrez Gene	100802646