PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.07G092700.2.p

Common Name

GLYMA_07G092700

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 257aa MW: 28816.7 Da PI: 6.5096

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G092700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24	7e-08	165	212	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L+ ++P + k + a +L + ++Y++sLq Glyma.07G092700.2.p 165 SHSLAERVRRGKINEKLRCLQNIVPGC----YKTMGMAVMLDEIINYVQSLQ 212 8***********************9....35599999********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.02E-8	159	216	No hit	No description
SuperFamily	SSF47459	1.44E-15	159	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.0E-15	161	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.723	161	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.4E-5	165	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-7	167	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MAEFTENMQL QSNIRPSQFP FLEIDPSMEL LNQFLGMNQH VLENSNLIPM HNLVPFSCDT 60 FLGPQEPECP GNLEENFPAH VNHNALPISL PIFQAENEIH EGKKRKSMDL PETSSANSTP 120 AVSESGSKIK HSSGRGKRVK SNVTEEEKAK EVVHVRARRG QATDSHSLAE RVRRGKINEK 180 LRCLQNIVPG CYKTMGMAVM LDEIINYVQS LQHQVEFLSL KLTAASTFYD FNSETDALET 240 MQLICGREQG HPRQKS*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in stems. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G092700.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031256	0.0	KT031256.1 Glycine max clone HN_CCL_43 bHLH transcription factor (Glyma07g10311.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028239853.1	0.0	transcription factor BEE 1-like isoform X2
Swissprot	Q8GWK7	4e-58	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	A0A0R0J195	0.0	A0A0R0J195_SOYBN; Uncharacterized protein
STRING	GLYMA07G10311.1	1e-180	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73830.1	2e-60	BR enhanced expression 3

Link Out ? help Back to Top
Phytozome	Glyma.07G092700.2.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]