PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.07G105100.1.p

Common Name

GLYMA_07G105100

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

GRAS

Protein Properties

Length: 304aa MW: 34525.1 Da PI: 5.033

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G105100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	26.3	8.5e-09	265	303	67	105
GRAS 67 setseknsseelaalklfsevsPilkfshltaNqaIlea 105 + +e +s ee+ a++ ++ vsP+++f+h+taNqaIlea Glyma.07G105100.1.p 265 HKRPEPKSGEEFLAFTDLYRVSPYYQFAHFTANQAILEA 303 33334458888899999********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14244	8.2E-21	14	61	IPR029472	Gag-polypeptide of LTR copia-type
Pfam	PF03514	2.9E-6	265	303	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MPAVMDDANP FFIHSLDNPG LMLVSHLLLG DNYSSWKKAM EMSLLGKNKF GFVDGSIVEP 60 ALGHAYHATW HRNDDIVASW LLNSLLKKDA SSMSVSSYYA KLRSIWESQL ELKPAHTCTG 120 NGIKPWCEYA QLEYAMHFLM GLNEAYFWIR GQILSMDPFT SITKMIFSLV VQEEKQTEGN 180 WVPSPLLNHK SPYQVDRDVI FHEIIFPFHS NVVDQELPEF FNDFVIPLPI SEHSSSVPDF 240 EDAHPTIDDS VISLGTTAER SSREHKRPEP KSGEEFLAFT DLYRVSPYYQ FAHFTANQAI 300 LEA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G105100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	1e-36	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025981688.1	5e-70	uncharacterized protein LOC112999585
Refseq	XP_028201736.1	5e-70	uncharacterized protein LOC114385894
TrEMBL	K7L0W9	0.0	K7L0W9_SOYBN; Uncharacterized protein
STRING	GLYMA07G11865.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF30	3	3

Link Out ? help Back to Top
Phytozome	Glyma.07G105100.1.p