PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G107200.1.p
Common NameGLYMA_07G107200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 219aa    MW: 24333.4 Da    PI: 9.2334
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G107200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer91.48.3e-2950103357
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                          ++ Y+eCl+NhAaslG++a+DGCgEf+ +  ++ ++ +l+C ACgCHRnFHR+ +
  Glyma.07G107200.1.p  50 NYLYRECLRNHAASLGSYATDGCGEFTLD-ADSVSSPSLQCMACGCHRNFHRKVT 103
                          689*************************9.5557999****************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.0E-2451103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.14853102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.0E-2453101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-2353101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.6E-27133202IPR009057Homeodomain-like
SuperFamilySSF466895.61E-15133201IPR009057Homeodomain-like
TIGRFAMsTIGR015658.4E-29142200IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MPISSLSISM STQYIHQINI YIKTYTTPSL KVTQKPHKQE RKMENSSSSN YLYRECLRNH  60
AASLGSYATD GCGEFTLDAD SVSSPSLQCM ACGCHRNFHR KVTCPVVEGP QVVTGGSGDM  120
MEYSGGEGRM EMGERSGGGS SKKRFRTKFS AEQKEKMLGF AEKLGWKLQR KEVDDEIERF  180
CKSVGVTRQV FKVWMHNHKN NSNSSTNSSV NLSSLTQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-221432051879ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.289950.0cotyledon| hypocotyl| vegetative bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G107200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6957300.0AY695730.1 Glycine max zinc finger homeodomain protein SZF-HD2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237557.21e-130zinc finger homeodomain protein SZF-HD2
TrEMBLA0A0R0J1X91e-163A0A0R0J1X9_SOYBN; Uncharacterized protein
STRINGGLYMA07G12140.21e-157(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79822844
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-38homeobox protein 22