PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G111800.1.p
Common NameGLYMA_07G111800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 98aa    MW: 10915.9 Da    PI: 9.3194
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G111800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.43.7e-1345821451
                         HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF 14 skRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         + R   ++KKA+EL +LC a+v ++ifs t klyey+s
  Glyma.07G111800.1.p 45 TTRTLQMIKKAKELAILCTAQVGLVIFSCTRKLYEYAS 82
                         55777789****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.3113584IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-133588IPR002100Transcription factor, MADS-box
SMARTSM004327.1E-43983IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-94661IPR002100Transcription factor, MADS-box
PfamPF003197.6E-114780IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-96182IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MIDCQVLQLR NDPNPAVREA AILCIEAILT RSFTEKDYKK ITVATTRTLQ MIKKAKELAI  60
LCTAQVGLVI FSCTRKLYEY ASTSFTKRPI EGNATMN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G111800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A445JVE81e-64A0A445JVE8_GLYSO; Uncharacterized protein
TrEMBLK7L1A11e-64K7L1A1_SOYBN; Uncharacterized protein
STRINGGLYMA07G14363.12e-65(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3555022
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.17e-13AGAMOUS-like 44