PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G130400.1.p
Common NameGLYMA_07G130400, LOC100790644
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 1111aa    MW: 122978 Da    PI: 6.7683
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G130400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.52.1e-22129230199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ a+++      +++++  ++l+ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F  
  Glyma.07G130400.1.p 129 FCKQLTASDTSTHGGFSVPRRAADKIfppldySMQPPA-QELVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI- 216
                          99*****************************9545444.38************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           ++++++l+++++r+
  Glyma.07G130400.1.p 217 -RDEKQHLLLGIRRA 230
                          .5689999****997 PP
2Auxin_resp119.72.4e-39255338183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaa+++s+F+v+YnPr+s+seFv++++k+ k+++ ++ s+GmRf+m+feteds +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Glyma.07G130400.1.p 255 AAHAAANNSPFTVFYNPRTSPSEFVIPLAKYYKSVYsHQPSLGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQ 338
                          79********************************9989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.79E-42118258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-40120244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-18128229No hitNo description
PROSITE profilePS5086311.688129231IPR003340B3 DNA binding domain
SMARTSM010191.9E-21129231IPR003340B3 DNA binding domain
PfamPF023623.3E-20129230IPR003340B3 DNA binding domain
PfamPF065072.8E-34255338IPR010525Auxin response factor
PfamPF023095.0E-79971083IPR033389AUX/IAA domain
PROSITE profilePS5174526.7389981082IPR000270PB1 domain
SuperFamilySSF542776.96E-610111076No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1111 aa     Download sequence    Send to blast
MKTTQQPEAP QGDPCEEKKK SINPELWQAC AGPLVNLPPS GTHVIYFPQG HSEQVAASLN  60
KDPHSQIPNY PNLPSKLLCL LHNLTLLADP ETDEVYAQIT LQPVPSFDKD ALLRSDLALK  120
SSKPQPDFFC KQLTASDTST HGGFSVPRRA ADKIFPPLDY SMQPPAQELV ARDLHDTVWT  180
FRHIYRGQPK RHLLTTGWSL FVSGKRLLAG DSVLFIRDEK QHLLLGIRRA NRQPTNISSS  240
VLSSDSMHIG ILAAAAHAAA NNSPFTVFYN PRTSPSEFVI PLAKYYKSVY SHQPSLGMRF  300
RMMFETEDSG TRRYMGTITG ISDLDPVRWK NSQWRNLQVG WDESTAGEKR SRVSLWEIEP  360
VTAPFFICPP PFFRSKRPRQ PGMPDDELSD FDNIFKRTMP WLGDDMCMKD PQGLPGLSLA  420
QWMNMQQNPA LANSLQPNYA PSLSGSILQN IPGADISRQL GFSAPQISQS DNVALNTQRL  480
LQTAQQLDHL QKLPSTSSTL GTVLLPQQQL GDITQQPRQN LANQTIPQGQ VQSQLLHPQN  540
MVQTNNILQQ QQPSIQNHQL HRSLSQNPSQ QQTTIGQNQP QNLIQSPMPD HVQQLQMSDN  600
QIQLQLLQKL QQQKQTLLAQ QTALQQPTQL TQIQDQQRQL LDKTHNLSRA LTPGQVLEIP  660
HIIQNSLPEA NSISNQMTKA NCQSNIQFSQ QPKLQQQQQP GMVSEMPGHM ALLPTATTNQ  720
LSAGGSSIVT GAGGAGQSVI TDDVPSRSTS PSTNNCTNAL PQLINSRFPR STMVGDDMAH  780
SAATILSSSA LETSSSNANM LKDLQPKFEV KPSLNISKIQ NQGHFAPHTY LNGNAAHTDC  840
LDTSSSTTSV CLSQSDAHMN QNSNPLSYNR QSMLFRDNNQ DGEVQADARS NIPYANNIDS  900
QIGMPLNPDS LLTKGTLRLG KYLSNNFSSE GMLGNYENNR DAQQELSSSM VSQTFGVPDM  960
AFNSIDSTID DSNFLNSGPW APPPAPPPLP PAQFQRMRTY TKVYKRGAVG RSIDITRYSG  1020
YEELKKDLAR RFGIEGQLED RQRIGWKLVY VDHESDVLLV GDDPWEEFVN CVRCIKILSP  1080
QEVQQMSLDG DFGNGGLQNQ ACSSSDGGNT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1611835947388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.189700.0cotyledon| leaf| root| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G130400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529091.10.0auxin response factor 19
RefseqXP_028240273.10.0auxin response factor 19-like
TrEMBLA0A445JW450.0A0A445JW45_GLYSO; Auxin response factor
TrEMBLI1KJW60.0I1KJW6_SOYBN; Auxin response factor
STRINGGLYMA07G15640.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Representative plantOGRP41931125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19