PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G130400.3.p
Common NameGLYMA_07G130400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 1108aa    MW: 122565 Da    PI: 6.9121
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G130400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.52.1e-22126227199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ a+++      +++++  ++l+ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F  
  Glyma.07G130400.3.p 126 FCKQLTASDTSTHGGFSVPRRAADKIfppldySMQPPA-QELVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI- 213
                          99*****************************9545444.38************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           ++++++l+++++r+
  Glyma.07G130400.3.p 214 -RDEKQHLLLGIRRA 227
                          .5689999****997 PP
2Auxin_resp119.72.4e-39252335183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaa+++s+F+v+YnPr+s+seFv++++k+ k+++ ++ s+GmRf+m+feteds +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Glyma.07G130400.3.p 252 AAHAAANNSPFTVFYNPRTSPSEFVIPLAKYYKSVYsHQPSLGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQ 335
                          79********************************9989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.79E-42115255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-40117241IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-18125226No hitNo description
PROSITE profilePS5086311.688126228IPR003340B3 DNA binding domain
PfamPF023623.3E-20126227IPR003340B3 DNA binding domain
SMARTSM010191.9E-21126228IPR003340B3 DNA binding domain
PfamPF065072.8E-34252335IPR010525Auxin response factor
PfamPF023094.9E-79941080IPR033389AUX/IAA domain
PROSITE profilePS5174526.7389951079IPR000270PB1 domain
SuperFamilySSF542776.96E-610081073No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1108 aa     Download sequence    Send to blast
MCVLTTIIIL VGAEKKKSIN PELWQACAGP LVNLPPSGTH VIYFPQGHSE QVAASLNKDP  60
HSQIPNYPNL PSKLLCLLHN LTLLADPETD EVYAQITLQP VPSFDKDALL RSDLALKSSK  120
PQPDFFCKQL TASDTSTHGG FSVPRRAADK IFPPLDYSMQ PPAQELVARD LHDTVWTFRH  180
IYRGQPKRHL LTTGWSLFVS GKRLLAGDSV LFIRDEKQHL LLGIRRANRQ PTNISSSVLS  240
SDSMHIGILA AAAHAAANNS PFTVFYNPRT SPSEFVIPLA KYYKSVYSHQ PSLGMRFRMM  300
FETEDSGTRR YMGTITGISD LDPVRWKNSQ WRNLQVGWDE STAGEKRSRV SLWEIEPVTA  360
PFFICPPPFF RSKRPRQPGM PDDELSDFDN IFKRTMPWLG DDMCMKDPQG LPGLSLAQWM  420
NMQQNPALAN SLQPNYAPSL SGSILQNIPG ADISRQLGFS APQISQSDNV ALNTQRLLQT  480
AQQLDHLQKL PSTSSTLGTV LLPQQQLGDI TQQPRQNLAN QTIPQGQVQS QLLHPQNMVQ  540
TNNILQQQQP SIQNHQLHRS LSQNPSQQQT TIGQNQPQNL IQSPMPDHVQ QLQMSDNQIQ  600
LQLLQKLQQQ KQTLLAQQTA LQQPTQLTQI QDQQRQLLDK THNLSRALTP GQVLEIPHII  660
QNSLPEANSI SNQMTKANCQ SNIQFSQQPK LQQQQQPGMV SEMPGHMALL PTATTNQLSA  720
GGSSIVTGAG GAGQSVITDD VPSRSTSPST NNCTNALPQL INSRFPRSTM VGDDMAHSAA  780
TILSSSALET SSSNANMLKD LQPKFEVKPS LNISKIQNQG HFAPHTYLNG NAAHTDCLDT  840
SSSTTSVCLS QSDAHMNQNS NPLSYNRQSM LFRDNNQDGE VQADARSNIP YANNIDSQIG  900
MPLNPDSLLT KGTLRLGKYL SNNFSSEGML GNYENNRDAQ QELSSSMVSQ TFGVPDMAFN  960
SIDSTIDDSN FLNSGPWAPP PAPPPLPPAQ FQRMRTYTKV YKRGAVGRSI DITRYSGYEE  1020
LKKDLARRFG IEGQLEDRQR IGWKLVYVDH ESDVLLVGDD PWEEFVNCVR CIKILSPQEV  1080
QQMSLDGDFG NGGLQNQACS SSDGGNT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1621535647388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.189700.0cotyledon| leaf| root| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G130400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529091.10.0auxin response factor 19
RefseqXP_028240273.10.0auxin response factor 19-like
TrEMBLA0A445JW690.0A0A445JW69_GLYSO; Auxin response factor
TrEMBLI1KJW70.0I1KJW7_SOYBN; Auxin response factor
STRINGGLYMA07G15640.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19