PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.07G158500.1.p

Common Name

GLYMA_07G158500

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 243aa MW: 28554.6 Da PI: 7.9849

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G158500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25	6e-08	15	50	1	37
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCsk 37 kfY +YAk +GF +rk++ ++ nge+++++fvC + Glyma.07G158500.1.p 15 KFYYAYAKFIGFAIRKDEVRYV-SNGEVKRHQFVCDR 50 6**************99998.8999******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.7E-5	15	51	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MPLWGRIASE EVAYKFYYAY AKFIGFAIRK DEVRYVSNGE VKRHQFVCDR LHGKVDNADM 60 FYEKGLILED GKLMHLFWVN GTSRIDYQCF GDVVAFNATY KKNNEAIEEV FHDATHRLCG 120 WHLQKNAFEN MKSQEFLHDF KKAFSIYECV NSVIKTYIQR KNTLVELLYN FEHSLRDYRY 180 NELVSNFNSL YTNPVIDSSL LRIEEHVATL YTRYIYNKVK VQIVNVSGLN VTPRTEALDK 240 VM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G158500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020231066.1	4e-41	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A445JXB4	0.0	A0A445JXB4_GLYSO; Uncharacterized protein
TrEMBL	K7L206	0.0	K7L206_SOYBN; Uncharacterized protein
STRING	GLYMA07G19571.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF845	4	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	3e-07	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Glyma.07G158500.1.p