PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.07G159300.2.p

Common Name

GLYMA_07G159300, LOC100819004

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

SBP

Protein Properties

Length: 993aa MW: 109566 Da PI: 7.963

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G159300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.1	1.7e-40	102	179	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe+hska+++l+++++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ Glyma.07G159300.2.p 102 MCQVDNCREDLSKAKDYHRRHKVCEAHSKASKALLANQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 179 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.9E-34	97	164	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.889	100	177	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.09E-37	101	181	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.9E-30	103	176	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	6.8E-4	200	235	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.95E-5	739	887	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	6.8E-4	783	889	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	5.06E-4	786	885	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 993 aa Download sequence Send to blast
MEKVAPPPIL MHRKRDLSYD IVSAGPNESW RWEWDSVRFA GKPPPPPPLS PNNDVVFEAE 60 SVVPPLQLKL GGTTRVNNNN ININVSNKRV RSGSPGTASY PMCQVDNCRE DLSKAKDYHR 120 RHKVCEAHSK ASKALLANQM QRFCQQCSRF HPLSEFDEGK RSCRRRLAGH NRRRRKTQPE 180 DVTSATPAPA AAANLEIFNL LTAIAGASQD LATKLLDAGS GNVNGKKDHV QLQTPSSSYQ 240 CHESHDLLNH TPAAPLTMDL LAVLSTTLSG GSAPDSSASP SQNRSCSSDG GSADQTRQQQ 300 FFSVGGERSS SSSQSPVEDS DCQEVRVNLP LQLFSSSPED DSLPKLASSR KYFSSDSSNP 360 AEERSPSSSP PIVEMQFDLQ DGARGLKPES ISSGRGVNAN KEASQSHSSN ISLDLFKGSN 420 NWIQQPSSLQ SVPFQAGYTS SGSDHSPPSL NSDAQDRTGR IMFKLFDKHP SHFPGTLRAQ 480 IYNWLSNRPS DMESYIRPGC VVLSIYASMS SADWERLEEN FLQHVHSLIQ NSDSDFWRNG 540 RFLVHSGSRL VSHKDGKIRI CKPWRTWKSP ELISVSPLAI VSGQETSISL KGRNLSTLGT 600 KIHCTGTGSY ASAEVIGSAH SGVMYDKIKL SGFKVQDVSP GVLGRCFIEV ENGFKGNSFP 660 VIIADETICK ELRPLESEFD EEEKICDAIS EEHEHHFGRP RSREEALHFL NELGWLFQRE 720 RFSYVHEVPC YSLDRFKFVL IFAVERNCCM LIKTLLDVLV GKHLQGEWLS TGSVEMLNAI 780 QLLNRAVKGK YVGMVDLLIH YSIPSKNGTS RKYVFPPNLE GPGGITPLHL AACTSGSESV 840 VDSLTSDPQE IGLKCWESLV DANGQSPHAY AMMRNNDSYN ALVARKLADR QRGEISVTIA 900 NAIEQQSLRV ELKQKQSYLV KRGQSSCAKC ANAEIRYNRR VPGSHGLLHR PFIYSMLAVA 960 AVCVCVCVFF RGRPFVGSVA PFSWENLDYG TM*

Sequence ? help Back to Top

Protein Sequence Length: 993 aa Download sequence Send to blast

MEKVAPPPIL MHRKRDLSYD IVSAGPNESW RWEWDSVRFA GKPPPPPPLS PNNDVVFEAE  60
SVVPPLQLKL GGTTRVNNNN ININVSNKRV RSGSPGTASY PMCQVDNCRE DLSKAKDYHR  120
RHKVCEAHSK ASKALLANQM QRFCQQCSRF HPLSEFDEGK RSCRRRLAGH NRRRRKTQPE  180
DVTSATPAPA AAANLEIFNL LTAIAGASQD LATKLLDAGS GNVNGKKDHV QLQTPSSSYQ  240
CHESHDLLNH TPAAPLTMDL LAVLSTTLSG GSAPDSSASP SQNRSCSSDG GSADQTRQQQ  300
FFSVGGERSS SSSQSPVEDS DCQEVRVNLP LQLFSSSPED DSLPKLASSR KYFSSDSSNP  360
AEERSPSSSP PIVEMQFDLQ DGARGLKPES ISSGRGVNAN KEASQSHSSN ISLDLFKGSN  420
NWIQQPSSLQ SVPFQAGYTS SGSDHSPPSL NSDAQDRTGR IMFKLFDKHP SHFPGTLRAQ  480
IYNWLSNRPS DMESYIRPGC VVLSIYASMS SADWERLEEN FLQHVHSLIQ NSDSDFWRNG  540
RFLVHSGSRL VSHKDGKIRI CKPWRTWKSP ELISVSPLAI VSGQETSISL KGRNLSTLGT  600
KIHCTGTGSY ASAEVIGSAH SGVMYDKIKL SGFKVQDVSP GVLGRCFIEV ENGFKGNSFP  660
VIIADETICK ELRPLESEFD EEEKICDAIS EEHEHHFGRP RSREEALHFL NELGWLFQRE  720
RFSYVHEVPC YSLDRFKFVL IFAVERNCCM LIKTLLDVLV GKHLQGEWLS TGSVEMLNAI  780
QLLNRAVKGK YVGMVDLLIH YSIPSKNGTS RKYVFPPNLE GPGGITPLHL AACTSGSESV  840
VDSLTSDPQE IGLKCWESLV DANGQSPHAY AMMRNNDSYN ALVARKLADR QRGEISVTIA  900
NAIEQQSLRV ELKQKQSYLV KRGQSSCAKC ANAEIRYNRR VPGSHGLLHR PFIYSMLAVA  960
AVCVCVCVFF RGRPFVGSVA PFSWENLDYG TM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-32	93	176	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.14317	0.0	leaf\| meristem\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in vasculature of aerial parts. Expressed in cotyledons and leaf petioles. {ECO:0000269\|PubMed:15703061}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G159300.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235330	0.0	AC235330.1 Glycine max strain Williams 82 clone GM_WBb0082G12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006583697.1	0.0	squamosa promoter-binding-like protein 14 isoform X2
Refseq	XP_028240598.1	0.0	squamosa promoter-binding-like protein 14 isoform X2
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A445JXC1	0.0	A0A445JXC1_GLYSO; Squamosa promoter-binding-like protein 14 isoform B
TrEMBL	K7L214	0.0	K7L214_SOYBN; Uncharacterized protein
STRING	GLYMA07G19770.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Link Out ? help Back to Top
Phytozome	Glyma.07G159300.2.p
Entrez Gene	100819004

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]