PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G163700.3.p
Common NameGLYMA_07G163700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 356aa    MW: 40107.9 Da    PI: 8.2019
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G163700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.82.3e-19221312499
                          E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                          vl ps+  + ++++lp +fae++ +g++     ++l+ ++gr+W+v++ yr+++    l++GW eF  +n+L egD++vF+l + +e  l
  Glyma.07G163700.3.p 221 VLRPSYLYRGCIMYLPSTFAEKNlNGVSG---FIKLQLSNGRQWSVRCLYRGGR--AKLSQGWFEFTVENNLGEGDVCVFELLRMKEVVL 305
                          78899******************876743...59999999********665555..66***********************998899999 PP

                          EEEEE-S CS
                   B3  93 vvkvfrk 99 
                           v+vfr 
  Glyma.07G163700.3.p 306 QVTVFRV 312
                          9999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.4E-25210311IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.59E-24211312IPR015300DNA-binding pseudobarrel domain
CDDcd100178.15E-23216311No hitNo description
PROSITE profilePS5086314.325218313IPR003340B3 DNA binding domain
SMARTSM010193.5E-19218313IPR003340B3 DNA binding domain
PfamPF023625.6E-17221311IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MYEGNSSFIV HIFNLSTSEV NYQSAMRNHN EGSCFANYHH IFDEMEDVDS LGLSDLSPQY  60
LTPGALQSKG FAGSVDQLTP GKSHTPALQN LFNGGSKLNR VNWGDGGSAF SLKDANSQGN  120
QSTRDIGVQF NAVEFKRSTE ELKLRYSNSN EEAVNKTAKK KRKSEPYGEE PSGENEEEAE  180
MRYRFYESAS ARKRTVTAEE RERAINASKT FEPTNPFCRV VLRPSYLYRG CIMYLPSTFA  240
EKNLNGVSGF IKLQLSNGRQ WSVRCLYRGG RAKLSQGWFE FTVENNLGEG DVCVFELLRM  300
KEVVLQVTVF RVTEDAGLLN QLPMQQQQQS PNISHTKLLN PHLQHRISTT KLIRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-7318431415144B3 domain-containing transcription factor VRN1
4i1k_B2e-7318431415144B3 domain-containing transcription factor VRN1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.189980.0leaf| root| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G163700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0946860.0BT094686.1 Soybean clone JCVI-FLGm-24P12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529203.10.0B3 domain-containing transcription factor VRN1
RefseqXP_028240648.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A445JXI30.0A0A445JXI3_GLYSO; B3 domain-containing transcription factor VRN1 isoform A
TrEMBLK7L2470.0K7L247_SOYBN; Uncharacterized protein
STRINGGLYMA07G21160.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-82B3 family protein