 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Glyma.07G170500.1.p |
| Common Name | GLYMA_07G170500 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
C2H2 |
| Protein Properties |
Length: 363aa MW: 40529.9 Da PI: 9.7175 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.07G170500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 15.1 | 6.8e-05 | 23 | 43 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C+ Cgk F r nL+ H r H
Glyma.07G170500.1.p 23 CETCGKGFQRDQNLQLHRRGH 43
*******************88 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 363 aa
Download sequence Send
to blast |
MDIVAQVIAL SPKTLMATNR FLCETCGKGF QRDQNLQLHR RGHNLPWKLK QRTGKEARKR 60
VYVCPEKSCV HHDPSRALGD LTGIKKHFCR KHDEKKWKCE KCLKRYAVYR RDSFITHRAF 120
CDALAEETAR LNTASDINTF LGGNIGYNIM GTSLGPNMAT HFPSIFKPVS STNEISNQTS 180
WGLPLWMDSS TWFCHKLIRN NVFGTKISNS SNNQELTTST TTTTSLPIGN TSVPSLYFSQ 240
HQPQQTCSSA NMSATTLLQK AAQIGATLSD PSWLGNLGLK CGNNQGHHGN NNKYSGMYRS 300
SLVLTTLGSE ADNSACELSQ MHPHKRRHVL NEERREGQAR DFLGIGVQNH LPHFINQGVD 360
LI*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed throughout development. {ECO:0000269|PubMed:21265895}. |
| Uniprot | TISSUE SPECIFICITY: Highly expressed in vegetative organs and at lower levels in flowers and siliques. Expressed predominantly in roots. In roots, present in cortex, endodermis, and pericycle layer (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000305|PubMed:21265895}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC235296 | 0.0 | AC235296.1 Glycine max strain Williams 82 clone GM_WBb0059O10, complete sequence. |
