PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G171200.2.p
Common NameGLYMA_07G171200, LOC100804937
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 568aa    MW: 62488.1 Da    PI: 6.675
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G171200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.14.1e-28128181155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr++W+ eLH++Fv+av+qL G +kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Glyma.07G171200.2.p 128 KPRVVWSVELHQQFVSAVNQL-GLDKAVPKRILELMNVPGLTRENVASHLQKFRL 181
                          79*******************.********************************8 PP
2Response_reg32.34.9e-1215653109
                          CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
         Response_reg  53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                          mp+mdG++ll++   e  +lp+i++++ ++ + + + ++ Ga d+l Kp+ +eel++
  Glyma.07G171200.2.p   1 MPDMDGYKLLEHVGLEM-DLPVIMMSGDSTTSAVMKGIRHGACDYLIKPVREEELRN 56 
                          9************6644.8************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23007.1E-20175No hitNo description
SuperFamilySSF521723.13E-16167IPR011006CheY-like superfamily
CDDcd001561.45E-12161No hitNo description
PfamPF000725.8E-9157IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011024.353162IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5129410.194125184IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-30125186IPR009057Homeodomain-like
SuperFamilySSF466891.79E-19126185IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-24128181IPR006447Myb domain, plants
PfamPF002492.1E-7130179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MPDMDGYKLL EHVGLEMDLP VIMMSGDSTT SAVMKGIRHG ACDYLIKPVR EEELRNIWQH  60
VVRKFWNDSK EQDNSGSMED SDQNKRGNDD AEYTSVADAA VVKAPKKRSS LKEEDIELES  120
DDPAASKKPR VVWSVELHQQ FVSAVNQLGL DKAVPKRILE LMNVPGLTRE NVASHLQKFR  180
LYLKRLTGVA QQQNGMLNTV PGPIESNLGT NGRFDVQALA AAGHVPPETL AAIHAELLGH  240
PTNNIMSTVD QTTLLQASIQ GLKHSHAGHA VAYGQPLVKC PSNIGKNFSP SILTVNDTSS  300
GYGAWLSSNN TIGLVRPNNS VERVGIQNNN MLILEHQQRQ QPQQKQQQQQ QKQQQQLQQQ  360
SLIHDRSCSI NVQPSCLVVP SQSSETFQAI NSPASVNQDC SFAWNAIIDY SLLPQKSNNS  420
FSASQFPGGD TKARGVLYGY TTPSSCSTSS SNGNIQQLQN STLTFGAARP LPSLLPMTDR  480
KDPYGFKSGD LLDQVCFRNL GFVGKDSCIP SRFVENEIES SVSDFTQMKV NVDISGNRQK  540
EEPNIPKVSH PIIERYPSRD HSSVFAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-22125187264ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.599320.0flower| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G171200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528343.10.0two-component response regulator ORR21 isoform X1
RefseqXP_006583726.10.0two-component response regulator ORR21 isoform X1
RefseqXP_028240740.10.0two-component response regulator ORR21-like isoform X1
RefseqXP_028240741.10.0two-component response regulator ORR21-like isoform X1
SwissprotA2XE311e-111ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-111ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A0B2RQH30.0A0A0B2RQH3_GLYSO; Two-component response regulator
TrEMBLI1KKW60.0I1KKW6_SOYBN; Two-component response regulator
STRINGGLYMA07G26890.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.18e-83response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]