PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.07G177200.1.p

Common Name

GLYMA_07G177200

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

TCP

Protein Properties

Length: 199aa MW: 21779.3 Da PI: 6.5828

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G177200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	52.3	2.3e-16	89	155	34	89
TCP 34 dLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............k 89 +L++eL +++d++tieWLlqq +pa++++tgt+ ++a+++ + s +ss+s s++ + Glyma.07G177200.1.p 89 KLTRELCHKSDGETIEWLLQQVEPAVIAATGTGIIPANFTsLNISLRSSGS--SITffpgiafssdntN 155 79***********************************99976666666666..2223343333332221 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.3E-18	88	177	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MEGGEDLHHH HHHHHRHNNF PFQLLEKKED QETASCSTSS LYPSLEISTK PSMSNSTRSN 60 QLVVVAMVEA PNSKKPPPKR TSTKDRHMKL TRELCHKSDG ETIEWLLQQV EPAVIAATGT 120 GIIPANFTSL NISLRSSGSS ITFFPGIAFS SDNTNNNTST LLNFQSNTLN TTMLQQQAMP 180 ELSDGGVSSS LDILDTIV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.28085	5e-96	cotyledon\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G177200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF623859	4e-44	EF623859.1 Glycine max cultivar Williams 82 clone BAC 7C24, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003525467.1	5e-91	transcription factor TCP14
Refseq	XP_028231388.1	5e-91	transcription factor TCP14-like
TrEMBL	A0A0R0JC96	1e-144	A0A0R0JC96_SOYBN; Uncharacterized protein
TrEMBL	A0A445JY41	1e-144	A0A445JY41_GLYSO; Transcription factor TCP15
STRING	GLYMA07G29015.1	1e-100	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2120	32	80
Representative plant	OGRP2699	12	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	3e-22	TCP family protein

Link Out ? help Back to Top
Phytozome	Glyma.07G177200.1.p