PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G185300.3.p
Common NameGLYMA_07G185300, LOC100799262
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 328aa    MW: 36840.7 Da    PI: 6.8389
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G185300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-12151198355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + h ++Er+RR+++ ++f  L  l+P +     +K +Ka++L  A++Y+k+Lq
  Glyma.07G185300.3.p 151 QDHIIAERKRREKLSQRFIALSALVPGL-----QKTDKASVLGDAIKYLKQLQ 198
                          5799***********************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.12148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-17150212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-10152198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-17152216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.51E-12153201No hitNo description
SMARTSM003531.7E-14154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEISSIRGLP DDMEIMEDAT FLHQWHLSSI DDPNLLPIAA AFGETLQHHA FSTYPNFNPK  60
TSMETTLADD ERGTKHHRNI SLNPNSKSAQ TSSETQFVSF PNLFSFVDSN HTTPPPDTIS  120
QGTLGNHNNY VFKACQEAKK TGKRYKHSQP QDHIIAERKR REKLSQRFIA LSALVPGLQK  180
TDKASVLGDA IKYLKQLQEK VNALEEEQNM KKNVESVVIV KKCQLSNDVN NSSSEHDGSF  240
DEALPEIEAR FCERSVLIRV HCEKSKGVVE NTIQGIEKLH LKVINSNTMT FGRCALDITV  300
IAQMDMEFCM GVKDLVRNLR SAFTSFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14149213569Transcription factor MYC2
5gnj_B1e-14149213569Transcription factor MYC2
5gnj_E1e-14149213569Transcription factor MYC2
5gnj_F1e-14149213569Transcription factor MYC2
5gnj_G1e-14149213569Transcription factor MYC2
5gnj_I1e-14149213569Transcription factor MYC2
5gnj_M1e-14149213569Transcription factor MYC2
5gnj_N1e-14149213569Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161ERKRRE
2157162RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G185300.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529273.10.0transcription factor bHLH19 isoform X2
SwissprotQ9T0721e-56BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A0R0J5K50.0A0A0R0J5K5_SOYBN; Uncharacterized protein
STRINGGLYMA07G30420.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-59bHLH family protein