PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G188100.2.p
Common NameGLYMA_07G188100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 380aa    MW: 42121.8 Da    PI: 7.0403
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G188100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH149.1e-052733051754
                          HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           ++   L++l+ +      +K + a++L +A+eYIk L
  Glyma.07G188100.2.p 273 GDRVTALQQLVSPF-----GKTDTASVLHEAIEYIKFL 305
                          55666677777776.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.668256305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.81E-5266309No hitNo description
Gene3DG3DSA:4.10.280.103.0E-8266316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-11266320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MCEWKGYSIW SSNSTRVESR CNGRAESNFH SLIQEETGID SSNSQIHRDW IPKSFSSDGG  60
KQQIDDNNFK PLLLNQQEFS LDDHSLSSLT TAGLSSNRGF PNGSASSYGN PSTLQSLYDP  120
NYNPHPQHSL FTNRPMSYSS KACYGTPCTE LPTWSKASTF FKPTTTTIAK QQHPNIGLHF  180
SNNTPFWNAS AEALHDIRVG TFASTQSQYQ RPTFDDEEKP NFPITLLNRL NSEEILESAS  240
MAKKNVCEPA LKRPRIETPS PLPTFKVRKE KLGDRVTALQ QLVSPFGKTD TASVLHEAIE  300
YIKFLHDQVN VLSTSYMKNG APTQQQQGCD DLKDSEGPQQ DLKSKGLCLV PISSTFPVAT  360
GATSADQLWT PTFRGALLR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.386951e-98epicotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G188100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311203e-96KT031120.1 Glycine max clone HN_CCL_146 bHLH transcription factor (Glyma13g32320.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528420.10.0transcription factor bHLH112
RefseqXP_028240939.10.0transcription factor bHLH112-like isoform X1
SwissprotQ94JL32e-48BH112_ARATH; Transcription factor bHLH112
TrEMBLK7L2L00.0K7L2L0_SOYBN; Uncharacterized protein
STRINGGLYMA07G30745.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.11e-50bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HC, et al.
    The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.
    Plant Mol. Biol., 2017. 94(4-5): p. 531-548
    [PMID:28631168]