PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.07G194600.1.p

Common Name

GLYMA_07G194600

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 324aa MW: 38139.9 Da PI: 9.1336

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G194600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.2	1.5e-14	143	230	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 fY Ak + F v+ks+ ++ +ng+++++tf Cs+ g++++ + ++++r+tr+et ++Cka + v+ ++ +++w+v+k + HnH++ Glyma.07G194600.1.p 143 FYTWNAKFTDFFVCKSHVLRN-KNGQVIQQTFLCSRAGEKKRVLSMSQRKRKTRNETCCECKAFFCVHISQhNHNWYVSKGKYYHNHAM 230 89999999*******9999.7788************99999*****************9998*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-11	143	230	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MDMMPMKMNM MVMKMHMKAM QATMTTLTMD QLTMQMIMKL IVIDLFSILM GMKMNVMDFM 60 ETKLKMKGMN FMEIKLNIKV MDFIMLKMYL KMKVMIFFGN EDVFEDEGGA KDDILVNVDI 120 GVNADGDDFP RIDFLDHEVA YLFYTWNAKF TDFFVCKSHV LRNKNGQVIQ QTFLCSRAGE 180 KKRVLSMSQR KRKTRNETCC ECKAFFCVHI SQHNHNWYVS KGKYYHNHAM LDRRYCPLLV 240 AHKNMTTTNI MQIDNFRKVG IRIPHIFAAF ANISSGYENV GFVMKDIYNQ YGKQRHEQSF 300 DIIDSETRWT DMVERFGLQN TTR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	193	QRKRKT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G194600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0R0J5A1	0.0	A0A0R0J5A1_SOYBN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3265	7	34
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-10	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Glyma.07G194600.1.p