PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.07G197300.1.p

Common Name

GLYMA_07G197300, LOC100810793

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 172aa MW: 19271 Da PI: 9.5171

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G197300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.4	3.9e-11	9	60	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 r+ + +E++RR+++++ f++L +++P++ +s+ s + +A++YIk+Lq Glyma.07G197300.1.p 9 RTDTKSIEQNRRNQMKDLFSKLNSVVPHQ---SSRDaTSRPDKIGEATNYIKNLQ 60 677789********************7...45555999999*********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-12	5	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.14E-6	5	64	No hit	No description
PROSITE profile	PS50888	10.785	7	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.7E-8	9	60	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-11	9	73	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.8E-6	13	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MENNPSSSRT DTKSIEQNRR NQMKDLFSKL NSVVPHQSSR DATSRPDKIG EATNYIKNLQ 60 IKLEKMKEKR NNLIDIERSK NASMNMGLKS PQFKIQQMGS ALEIVLVTGM DCQFMFNETI 120 RVLQEEGSDI VNASYTVVEN AVFHTIHCQV GGSANGALRI SEKIKKYLNG C*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G197300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	2e-95	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003528456.2	1e-125	transcription factor bHLH162
TrEMBL	A0A0R0JBH0	1e-124	A0A0R0JBH0_SOYBN; Uncharacterized protein
STRING	GLYMA07G31710.2	1e-107	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF906	34	98
Representative plant	OGRP1345	11	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	5e-43	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.07G197300.1.p
Entrez Gene	100810793