PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.07G198900.1.p

Common Name

GLYMA_07G198900, LOC778101

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 349aa MW: 37457.3 Da PI: 9.0834

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G198900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.4	1.7e-39	49	109	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Glyma.07G198900.1.p 49 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRMK 109 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	9.0E-34	51	107	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	53	107	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-26	54	107	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	55	91	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MFGGKCEKMV AVTPQTASNK WTQTQQIDDH KAPMGRIMEK PSQDLLQQQQ QALKCPRCDS 60 SNTKFCYYNN YSLSQPRHFC KACKRYWTRG GTLRNVPVGG GCRKNKRMKR PTNGDSSSAN 120 SPSSSTPSAS SNPPSQPHID NIIVSGSATN HINNINPLFY GGDVMNNVPF PKFNLLQSQL 180 NALGLGFSSG VRENGFSTTS NNNFFSAYNS IFGSSSSSTC APSTPVMASL LSSTLLQQNF 240 MGGGGGGVKG RDHDQGDNTF HGLAPLQGLR VEGDSNNNIG SKEVKGEGQN RFEWSNNNNN 300 NNNNGGGGQN QMEHVGLSDP NSLYWNTATG LGAWSDQPNI GPSVTSLI*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MFGGKCEKMV AVTPQTASNK WTQTQQIDDH KAPMGRIMEK PSQDLLQQQQ QALKCPRCDS  60
SNTKFCYYNN YSLSQPRHFC KACKRYWTRG GTLRNVPVGG GCRKNKRMKR PTNGDSSSAN  120
SPSSSTPSAS SNPPSQPHID NIIVSGSATN HINNINPLFY GGDVMNNVPF PKFNLLQSQL  180
NALGLGFSSG VRENGFSTTS NNNFFSAYNS IFGSSSSSTC APSTPVMASL LSSTLLQQNF  240
MGGGGGGVKG RDHDQGDNTF HGLAPLQGLR VEGDSNNNIG SKEVKGEGQN RFEWSNNNNN  300
NNNNGGGGQN QMEHVGLSDP NSLYWNTATG LGAWSDQPNI GPSVTSLI*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.28675	0.0	epicotyl\| hypocotyl

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G198900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT094037	0.0	BT094037.1 Soybean clone JCVI-FLGm-14M14 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006583829.1	0.0	dof zinc finger protein DOF1.4 isoform X1
Refseq	XP_028241073.1	0.0	dof zinc finger protein DOF1.4-like isoform X1
TrEMBL	A0A0B2Q8E3	0.0	A0A0B2Q8E3_GLYSO; Dof zinc finger protein DOF1.4
TrEMBL	K7L2R4	0.0	K7L2R4_SOYBN; Uncharacterized protein
STRING	GLYMA07G31870.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	4e-35	Dof family protein

Link Out ? help Back to Top
Phytozome	Glyma.07G198900.1.p
Entrez Gene	778101