PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G199700.1.p
Common NameGLYMA_07G199700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 218aa    MW: 24107.3 Da    PI: 10.1309
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G199700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.56e-12244954
                  AP2  9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                         +k++g++ ++Ir+p   gk+  ++lg+f++a eAaka++aa+ k+ 
  Glyma.07G199700.1.p  2 RKRWGKYGVYIRHP---GKKILVWLGSFDSAIEAAKAYDAAAIKFC 44
                         89***********8...557**********************9975 PP
2AP228.92.8e-09901201750
                  AP2  17 AeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 
                          +++r p   +k++r++lg+f++a eAaka++aa 
  Glyma.07G199700.1.p  90 VHYRRP---NKKTRVWLGTFDFAIEAAKAYDAAT 120
                          566666...347********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.185154IPR001471AP2/ERF domain
PfamPF008471.1E-4244IPR001471AP2/ERF domain
SMARTSM003801.7E-17260IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-17254IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-11254IPR016177DNA-binding domain
SMARTSM003808.8E-978140IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-891135IPR016177DNA-binding domain
PROSITE profilePS5103211.57591134IPR001471AP2/ERF domain
PfamPF008471.8E-592121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-1493134IPR001471AP2/ERF domain
CDDcd000184.47E-1593135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MRKRWGKYGV YIRHPGKKIL VWLGSFDSAI EAAKAYDAAA IKFCGFDKAK TNFSIPQNHN  60
NNVVIQTPTT MDSLTTNFTS HNQASFAPTV HYRRPNKKTR VWLGTFDFAI EAAKAYDAAT  120
IKFCDPDKAR TNFPIPKIHK NNMVIQTPTT INSSTTTTNP SSSMSLPIHV NCSTSHNQGH  180
SGCSSSSTFI VVEAGKKLDV DLNYPPPLRN PLNREQC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G199700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028242307.14e-43ethylene-responsive transcription factor 11-like
TrEMBLK7L2S11e-161K7L2S1_SOYBN; Uncharacterized protein
STRINGGLYMA07G31995.11e-162(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3558722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.15e-12erf domain protein 9