PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G201800.1.p
Common NameGLYMA_07G201800, LOC100795920
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 327aa    MW: 37090.6 Da    PI: 6.9069
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G201800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.53.3e-33682081128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 
                          lp+G++F+P+d+e++ e+L++kv ++       ++  e   +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++ 
  Glyma.07G201800.1.p  68 LPAGVKFDPNDQEIL-EHLEAKVLSDVpklhplID--EfipTLEGEnGICYTHPEKLP-GVRKDGQIRHFFHRPSKAYTTGTRKRRKVHt 153
                          799***********9.99****9999856643322..22222333336**********.666677788******************7444 PP

                  NAM  80 .....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                               + +W++tgk+++v++ +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Glyma.07G201800.1.p 154 deegsETRWHKTGKTRPVFV-GGAVKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 208
                          46555778************.9*************6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-3764227IPR003441NAC domain
PROSITE profilePS5100533.26268227IPR003441NAC domain
PfamPF023657.3E-1569208IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MTWCNDSDEE RGIDQLVAPT ITPTSTNNTT VLTDHRTKAS EIRTLTCPSC GQNIEFQDQT  60
GINDLPGLPA GVKFDPNDQE ILEHLEAKVL SDVPKLHPLI DEFIPTLEGE NGICYTHPEK  120
LPGVRKDGQI RHFFHRPSKA YTTGTRKRRK VHTDEEGSET RWHKTGKTRP VFVGGAVKGF  180
KKILVLYTNY GRQKKPEKTN WVMHQYHLGT SEEEKDGELV VSKVFYQTQP RQCGNSIIKQ  240
DLYDEERLMT NQSVHNDDDN NIIPRNNNAS ALMDYYNPSF INYDQLGGRS NRENSPQLIP  300
NLVMQGDSSS FIRLAMDATK AKMDRK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.202380.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G201800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529352.10.0NAC domain-containing protein 73
RefseqXP_028241106.10.0NAC domain-containing protein 73-like
SwissprotO494591e-123NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0B2Q6P90.0A0A0B2Q6P9_GLYSO; NAC domain-containing protein 73 isoform A
TrEMBLI1KLQ20.0I1KLQ2_SOYBN; Uncharacterized protein
STRINGGLYMA07G32250.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-124NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]