PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G212400.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 231aa    MW: 25456.6 Da    PI: 4.8752
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G212400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.71.1e-2195145155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++y+GVr+++ +g+W+AeIrdp+    r +r++lg+fgtae+Aa+a+++a+ +++g
  Glyma.07G212400.1.p  95 KKYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFGTAEDAARAYDKAAIEFRG 145
                          59********.**********82....48************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.6E-3396154IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2396154IPR016177DNA-binding domain
SMARTSM003804.6E-3996159IPR001471AP2/ERF domain
PfamPF008474.3E-1596145IPR001471AP2/ERF domain
PROSITE profilePS5103225.21196153IPR001471AP2/ERF domain
CDDcd000186.61E-3497153No hitNo description
PRINTSPR003679.3E-1297108IPR001471AP2/ERF domain
PRINTSPR003679.3E-12119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MSSSSFSPAT LTTEQELSVI VAALTNVVAG STSASSSFSL PEFRLPQTSD PLAAACLMPP  60
PPPPSMDTCR ECNIAGCLGC NFFPEEKKKQ KRAKKKYRGV RQRPWGKWAA EIRDPRRAAR  120
VWLGTFGTAE DAARAYDKAA IEFRGPRAKL NFPLVDESLT LQQSEPERVQ TEEEQIKTEN  180
LNQGMEMDSF GNKDTEFWDR INEADFHQLM MMMDFAGDSS DSATGNALSS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2495154161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.67540.0flower| meristem| root| seed coat
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G212400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0957711e-173BT095771.1 Soybean clone JCVI-FLGm-19J6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014633006.11e-168uncharacterized protein LOC100820426
RefseqXP_028242320.11e-170ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ062e-34EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A0R0JAK21e-170A0A0R0JAK2_SOYBN; Uncharacterized protein
TrEMBLA0A445JZL51e-170A0A445JZL5_GLYSO; Ethylene-responsive transcription factor ERF109
STRINGGLYMA07G33511.11e-167(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.12e-31redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]