PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G218000.2.p
Common NameGLYMA_07G218000, LOC100775341
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 168aa    MW: 19114.8 Da    PI: 10.0123
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G218000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.37.4e-201872256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         rk+ ++tkeq + Lee F++n++++ +++e LA++l+L  rqV vWFqNrRa+ k
  Glyma.07G218000.2.p 18 RKKLRLTKEQSRLLEESFRQNHTLNPKQKESLAMQLKLRPRQVEVWFQNRRARSK 72
                         78889************************************************98 PP
2HD-ZIP_I/II119.81.4e-3818106190
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rl+keq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr +
  Glyma.07G218000.2.p  18 RKKLRLTKEQSRLLEESFRQNHTLNPKQKESLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELR-A 106
                          69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.8E-19372IPR009057Homeodomain-like
SuperFamilySSF466892.72E-19975IPR009057Homeodomain-like
PROSITE profilePS5007117.6861474IPR001356Homeobox domain
SMARTSM003897.6E-181678IPR001356Homeobox domain
CDDcd000861.54E-151775No hitNo description
PfamPF000463.3E-171872IPR001356Homeobox domain
PROSITE patternPS0002704972IPR017970Homeobox, conserved site
PfamPF021839.7E-1074107IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.4E-2174117IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MASNMEDEEE SSNGEPPRKK LRLTKEQSRL LEESFRQNHT LNPKQKESLA MQLKLRPRQV  60
EVWFQNRRAR SKLKQTEMEC EYLKRWFGSL TEQNRRLQRE VEELRAIKVG PPTVISPHSC  120
EPLPASTLSM CPRCERVTST ADKPPSAAAT LSAKVPPTQS RQPSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16674RRARSKLKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G218000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1416174e-84BT141617.1 Medicago truncatula clone JCVI-FLMt-6H7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528535.11e-118homeobox-leucine zipper protein HOX3 isoform X3
RefseqXP_028241317.11e-118homeobox-leucine zipper protein HOX3-like isoform X2
SwissprotQ0JKX12e-74HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH382e-74HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A0R0JF291e-117A0A0R0JF29_SOYBN; Uncharacterized protein
TrEMBLA0A445JZY81e-116A0A445JZY8_GLYSO; Homeobox-leucine zipper protein HOX3 isoform A
TrEMBLA0A445K0141e-117A0A445K014_GLYSO; Homeobox-leucine zipper protein HOX3 isoform B
TrEMBLI1KM501e-116I1KM50_SOYBN; Uncharacterized protein
STRINGGLYMA07G34230.11e-117(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.13e-69homeobox-leucine zipper protein 17