PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G224100.2.p
Common NameGLYMA_07G224100, LOC100804948
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 147aa    MW: 16440 Da    PI: 4.7717
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G224100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.65.2e-1448974292
                         TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3 42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
                          g+sW++ + y +++++ +  +GWk+Fv +n L++gD ++F+l+++s+++ 
  Glyma.07G224100.2.p 48 GGKSWDMVY-YGQSKQKAFGVTGWKKFVIDNCLRVGDACIFELMESSDKKV 97
                         59*******.777777788889********************997766544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.00444107IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-1339100IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-1147105IPR015300DNA-binding pseudobarrel domain
CDDcd100171.29E-1148105No hitNo description
PfamPF023626.9E-124898IPR003340B3 DNA binding domain
PROSITE profilePS5086310.84249107IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MHKFLMSLES GHSSCPQCFL ADQVEEMPGM NLRSKLPSNE VPTILIYGGK SWDMVYYGQS  60
KQKAFGVTGW KKFVIDNCLR VGDACIFELM ESSDKKVILE VQILRGDIPS EWLGNEMIIG  120
QGNEMIIGQE NEMIIGHSRE NPIVLN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G224100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583945.11e-105B3 domain-containing protein Os06g0112300 isoform X3
TrEMBLK7L3A41e-103K7L3A4_SOYBN; Uncharacterized protein
STRINGGLYMA07G35040.32e-83(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-09B3 family protein