PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G224100.4.p
Common NameGLYMA_07G224100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 174aa    MW: 19394.5 Da    PI: 5.7924
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G224100.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.61.1e-13751244292
                          TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3  42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                           g+sW++ + y +++++ +  +GWk+Fv +n L++gD ++F+l+++s+++ 
  Glyma.07G224100.4.p  75 GGKSWDMVY-YGQSKQKAFGVTGWKKFVIDNCLRVGDACIFELMESSDKKV 124
                          59*******.777777788889********************997766544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-1434127IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-1235132IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.004937134IPR003340B3 DNA binding domain
CDDcd100176.69E-1275132No hitNo description
PfamPF023621.4E-1175125IPR003340B3 DNA binding domain
PROSITE profilePS5086310.84276134IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MASGRVALEN GVPLPLLPDP KANLQWDEVK PLSGKPYWHS VLSPTNLQPR YNLMPGMNLR  60
SKLPSNEVPT ILIYGGKSWD MVYYGQSKQK AFGVTGWKKF VIDNCLRVGD ACIFELMESS  120
DKKVILEVQI LRGDIPSEWL GNEMIIGQGN EMIIGQENEM IIGHSRENPI VLN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G224100.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028241413.11e-124B3 domain-containing protein Os06g0112300-like isoform X1
TrEMBLA0A0R0J6T01e-123A0A0R0J6T0_SOYBN; Uncharacterized protein
STRINGGLYMA07G35040.31e-123(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-08B3 family protein