PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G224700.1.p
Common NameGLYMA_07G224700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 580aa    MW: 67656.1 Da    PI: 7.33
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G224700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1484.1e-15481102390
                 FAR1  23 krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          ++++e++++++ Cs  g++++++ +     ++r++trtgC a++++++ ++++w++ ++el+H H+++
  Glyma.07G224700.1.p  48 RKKKECYRAKLSCSSAGFKKKSEAN-----NPRPKTRTGCPAMIVIRMVESKRWRIVEVELQHDHQVS 110
                          67899***************99888.....9**********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-1348111IPR004330FAR1 DNA binding domain
PfamPF105511.7E-19212303IPR018289MULE transposase domain
PROSITE profilePS509668.741486517IPR007527Zinc finger, SWIM-type
PfamPF044343.7E-4489513IPR007527Zinc finger, SWIM-type
SMARTSM005756.2E-5492519IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MEEVCLNSEP LFDERNEVDV EGNSSIAEHD LESLNSQTNN SPLPTVDRKK KECYRAKLSC  60
SSAGFKKKSE ANNPRPKTRT GCPAMIVIRM VESKRWRIVE VELQHDHQVS PQSKRFYKSH  120
KEMILEASKS RPLPEPVTEV HTISHDTNFD KLKYLEHREG DGRAIYNYFC RMKLTDPNLF  180
YLFDIDDDGH LKNVFWADSR PRIAYNYFND TVTIDTNCLA NKYEIPLMSF VGINHHGHSV  240
LLGCGFLGHE SVDYFVWIFK AWLQCMLGRP PHVITDQCKP LQIAVARVFP HARHCYSLQY  300
IMQRVPEKLG GLQGYGPIRR KLYNAVYESL KIVEFESSWA DMIKCHGLVD NKWLQTLYKD  360
RHLWVPKTGP YDVFDGYVHK YTSFKEFLDK YDLALHRKHL KEAMADLESR KVSFELKTRC  420
NFEVQLAKGF TKEIFQKFQS EVDGMYSCFN TRQVSVNGSI ITYIVKESVE VEGNEKGVKS  480
FEDLYETTEL DIRCICSLFN YKGYLCKHAL NVLNYNSIEE IPSQYILNRW RRDFKQTFNQ  540
FHVSDNIDTY NPVDLYTHLF NSALPVLEVG AQSREHYMVA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.4760.0somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G224700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028219794.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A0R0J6T30.0A0A0R0J6T3_SOYBN; Uncharacterized protein (Fragment)
STRINGGLYMA07G35100.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-176FAR1-related sequence 6