PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G242000.1.p
Common NameGLYMA_07G242000, LOC100793970
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CAMTA
Protein Properties Length: 922aa    MW: 104294 Da    PI: 7.4451
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G242000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1165.31e-51301463118
                 CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                          +e ++rwl+++ei+a+L n++ +++  ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+++n
  Glyma.07G242000.1.p  30 EEaRTRWLRPNEIHAMLCNYKYFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDN 119
                          4559************************************************************************************** PP

                 CG-1  92 ptfqrrcywlLeeelekivlvhylevk 118
                          p+f rrcywlL++++e+ivlvhy+e++
  Glyma.07G242000.1.p 120 PNFVRRCYWLLDKSMEHIVLVHYRETQ 146
                          ************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.14925151IPR005559CG-1 DNA-binding domain
SMARTSM010761.2E-7528146IPR005559CG-1 DNA-binding domain
PfamPF038591.1E-4531144IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.108.9E-4366458IPR013783Immunoglobulin-like fold
PfamPF018332.1E-4369455IPR002909IPT domain
SuperFamilySSF812967.0E-15369456IPR014756Immunoglobulin E-set
CDDcd002043.74E-16554664No hitNo description
Gene3DG3DSA:1.25.40.202.6E-17555668IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484038.24E-19556669IPR020683Ankyrin repeat-containing domain
PfamPF127969.6E-8562634IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.857572664IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.007605637IPR002110Ankyrin repeat
SMARTSM002481.1E-5605634IPR002110Ankyrin repeat
SMARTSM00248940644673IPR002110Ankyrin repeat
SuperFamilySSF525402.52E-6752819IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000153.7768790IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.382769798IPR000048IQ motif, EF-hand binding site
PfamPF006120.025771789IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0016791813IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.718792816IPR000048IQ motif, EF-hand binding site
PfamPF006120.0046793813IPR000048IQ motif, EF-hand binding site
SMARTSM0001511872894IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.187874902IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 922 aa     Download sequence    Send to blast
MANNLAVQLV GSEMHGFHTL QDLDVGSIME EARTRWLRPN EIHAMLCNYK YFTINVKPVN  60
LPKSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGQDNP  120
NFVRRCYWLL DKSMEHIVLV HYRETQEMQG SPVTPVNSHS SSVSDPPAPW ILSEEIDSGT  180
TTAYTGDMSN NINVKSHELR LHEINTLEWD DLVDTNDHNA STVPNGGTVP YFDQQDQILL  240
NDSFGNVANN LSAEIPSFGN LTQPIAGSNR VPYNFSESVT LQTMDNQANP HEQKNNTVSL  300
SGVDSLDTLV NDRLQSQDSF GMWVNHIMSD SPCSVDDPAL ESPVSSIHEP YSSLVVDSQE  360
SSLPEQVFTI TDVSPTCVSS TEKSKVLVTG FFLKDYMHLS KSNLLCVCGD VSVPAEIVQV  420
GVYRCWVSPH SPGFVNLYLS IDGHKPISQV VNFEYRTPAL HDPAVSMEES DNWDEFRQQM  480
RLAYLLFAKQ LNLDVISSKV SPNRLKEARQ FALKTSFISN SWQYLIKSTE DNQIPFSQAK  540
DALFGITLKN RLKEWLLERI VLGCKTTEYD AHGQSVIHLC AILGYNWAVS LFSWSGLSLD  600
FRDRFGWTAL HWAAYCGREK MVATLLSAGA KPNLVTDPTP QNPGGCTAAD LAYMRGHDGL  660
AAYLSEKSLV QHFNDMSLAG NISGSLETST TDPVNPANLT EDQQNLKDTL TAYRTAAEAA  720
SRIHAAFREH SLKLRTKAVA SSNPEAQARK IVAAMKIQHA FRNHETKKMM AAAARIQCTY  780
RTWKIRKEFL NMRRQAVKIQ AAFRCFQVRK HYRKILWSVG VVEKAVLRWR LKRRGFRGLQ  840
VKTVDAGTGD QDQQSDVEEE FFRTGRKQAE ERVERSVVRV QAMFRSKKAQ EEYRRMKLAL  900
NQAKLEREYE QLLSTEVDMQ L*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.487300.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G242000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006584006.10.0calmodulin-binding transcription activator 5 isoform X2
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLK7L3K80.0K7L3K8_SOYBN; Uncharacterized protein
STRINGGLYMA07G37090.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42883459
Representative plantOGRP73511116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]