PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G243000.2.p
Common NameGLYMA_07G243000, LOC100527933
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 131aa    MW: 13741.5 Da    PI: 10.1916
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G243000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.93.2e-193972134
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                         C+ CgttkTplWR gp g+k+LCnaCG++ rkk+
  Glyma.07G243000.2.p 39 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKK 72
                         ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.7E-133383IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.6113369IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.23E-133373No hitNo description
Gene3DG3DSA:3.30.50.105.4E-163773IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.55E-133873No hitNo description
PROSITE patternPS0034403964IPR000679Zinc finger, GATA-type
PfamPF003204.6E-173973IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MVDPTGKGSE IEVEDSNSNP NAPSSGNSPS SNNEQKKTCA DCGTTKTPLW RGGPAGPKSL  60
CNACGIRSRK KKRAILGINK GSNEDGRKGK RTGGALGKEV LLHRSHWKKL GEEEKAAVLL  120
MSLSYGSVYA *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.90990.0flower| hypocotyl| pod| root| stem| vegetative bud
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO68479910.0
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G243000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0928360.0BT092836.1 Soybean clone JCVI-FLGm-12I15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235841.14e-90uncharacterized protein LOC100527933
RefseqXP_028241630.14e-90GATA transcription factor 15-like
SwissprotQ9FJ106e-33GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A445K1521e-88A0A445K152_GLYSO; GATA transcription factor 16 isoform B
TrEMBLC6T5X21e-88C6T5X2_SOYBN; Uncharacterized protein
STRINGGLYMA07G37190.16e-74(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.16e-34GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]