PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G250000.2.p
Common NameGLYMA_07G250000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 445aa    MW: 46504.1 Da    PI: 7.6645
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G250000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.77.1e-124974227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         +++ C +++rtG+C yG rC+F+H++
  Glyma.07G250000.2.p 49 DEADCIYYLRTGFCGYGTRCRFNHPR 74
                         6799********************96 PP
2zf-CCCH35.41.8e-11101126227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C+++ +tG+Ck+G++CkF+H++
  Glyma.07G250000.2.p 101 GQKECSYYVKTGQCKFGATCKFHHPQ 126
                          6789********************97 PP
3zf-CCCH34.34.1e-11267292227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C+++++tG Ck+G+ C+++H+p
  Glyma.07G250000.2.p 267 DQPECHHYMKTGDCKFGPLCRYHHPP 292
                          689*********************97 PP
4zf-CCCH30.94.6e-10314338327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           ++C ++ + G Ck+G+ CkF H++
  Glyma.07G250000.2.p 314 APPCTHYTQRGVCKFGSACKFDHPM 338
                          689********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.8544775IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-44774IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-64876IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-94974IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-55374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408100127IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-9101126IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4101126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-6101127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4105125IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-4265292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422265293IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-8267292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5268294IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5311338IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.69311339IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-7314338IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-6315341IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-5316336IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MERYGRASEG SQSDPSPEWT VAADVDAGLE ESSWQLGLPG AESYPMRPDE ADCIYYLRTG  60
FCGYGTRCRF NHPRDRAAVI GAAPRTGGEF PERVGQPVCQ GQKECSYYVK TGQCKFGATC  120
KFHHPQPAGV QVLAPSPVPP VSPLPVPVPS PMYPTVHPPS GPSQQQYGVL VARPPMLPGS  180
VVQGPYGPMV VSPTMVPFSG WSPYQAPATN PLLPSSTTSN VGSTQLYGIT QLPSSAATYT  240
GPYQPSGSSI GPSGASQKEH PFPERPDQPE CHHYMKTGDC KFGPLCRYHH PPDKSAPKAN  300
VTLSPVGLPL RPGAPPCTHY TQRGVCKFGS ACKFDHPMGS LSYSPSASSL ADMPVAPYPV  360
GSSIGTLALS SLSSELRPEL GAGSNKESVA SRMSSMSTST GSVGLTLSSV GPISHSSTQP  420
SAQSSSSPET TSATTSSTVS HTSS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.246000.0cotyledon| flower| leaf| seed coat| vegetative bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G250000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-150AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529584.10.0zinc finger CCCH domain-containing protein 34
RefseqXP_028241716.10.0zinc finger CCCH domain-containing protein 34-like
SwissprotQ84W911e-126C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0R0JDN50.0A0A0R0JDN5_SOYBN; Uncharacterized protein
STRINGGLYMA07G37980.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-111C3H family protein