PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.07G251100.1.p

Common Name

GLYMA_07G251100, LOC102670256

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 202aa MW: 22212.8 Da PI: 9.9008

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G251100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.9	1.6e-07	55	98	8	55
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er RR+++ + f +L++ +P + + + i ++++YIk+L+ Glyma.07G251100.1.p 55 VERERRSKMTQMFTQLQTTVPGvL-----PQATREVIINETIKYIKELE 98 7*******************88.....678899*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.448	47	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-5	53	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-10	54	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-11	55	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.39E-4	55	94	No hit	No description
Pfam	PF00010	4.0E-5	55	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MQGHTETNSI MAPLSQIPPS SSSLHLSTDA ETGNTTTPRK RVKKMDHTNC ESLNVERERR 60 SKMTQMFTQL QTTVPGVLPQ ATREVIINET IKYIKELEKK KQKLEELKES MKGVEGSILL 120 ACGNNMNCSV TVTVSANVAF FGIQSLPRPG LVTVIMKVFC KHRAEVLAAN VSVNNGKFIL 180 AITATVQNVV VENIKREIMS L*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G251100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006584040.1	1e-146	uncharacterized protein LOC102670256
TrEMBL	K7L3R7	1e-145	K7L3R7_SOYBN; Uncharacterized protein
STRING	GLYMA07G38085.1	1e-146	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14330	13	14
Representative plant	OGRP13847	3	4

Link Out ? help Back to Top
Phytozome	Glyma.07G251100.1.p
Entrez Gene	102670256