PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G001300.1.p
Common NameGLYMA_08G001300, LOC100778216
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YB
Protein Properties Length: 222aa    MW: 25393 Da    PI: 6.4195
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G001300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.46.7e-5645140297
                NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                          +eqdrflPianv+rimkkv+P n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyveplk+yl+ky+
  Glyma.08G001300.1.p  45 KEQDRFLPIANVGRIMKKVIPPNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDVIWAITTLGFEDYVEPLKTYLQKYK 134
                          89**************************************************************************************** PP

                NF-YB  92 elegek 97 
                          e+egek
  Glyma.08G001300.1.p 135 EIEGEK 140
                          ***996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.6E-5438167IPR009072Histone-fold
SuperFamilySSF471133.14E-4147169IPR009072Histone-fold
PfamPF008082.3E-2750114IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.9E-207896No hitNo description
PROSITE patternPS0068508197IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.9E-2097115No hitNo description
PRINTSPR006151.9E-20116134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MEDESHNNIL PNGFNTGSTE SPCLKTSTMT TQHNNNNNHQ NHSNKEQDRF LPIANVGRIM  60
KKVIPPNGKI SKDAKETVQE CVSEFISFVT GEASDKCQRE KRKTINGDDV IWAITTLGFE  120
DYVEPLKTYL QKYKEIEGEK LNIPKQLRSE QRLHQHQQNH NNNHDENNNQ PFNGAYASSN  180
LISQPPYVPT DQKFSLPFSP NSIQNQLRQQ EQIDSVGHWY E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B5e-4543135294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A5e-4543135294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and green siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G001300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532355.11e-165nuclear transcription factor Y subunit B-3
RefseqXP_028244070.11e-165nuclear transcription factor Y subunit B-3-like
SwissprotQ9SIT98e-68NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLA0A0R0IEV21e-164A0A0R0IEV2_SOYBN; Uncharacterized protein
TrEMBLA0A445J7R11e-164A0A445J7R1_GLYSO; Nuclear transcription factor Y subunit B-7
STRINGGLYMA08G00330.21e-162(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132492430
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.16e-67nuclear factor Y, subunit B7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]