PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G009700.1.p
Common NameGLYMA_08G009700, LOC100803200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 242aa    MW: 27331.8 Da    PI: 9.357
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G009700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM149.81.3e-46141401128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrF+Ptdeelv +yLk kv + +l++ ++i+e++++k++PwdLp ++  + +e +fFs+++ ky++g+r nr+tk gyWkatg+dk
  Glyma.08G009700.1.p  14 LPPGFRFQPTDEELVFQYLKCKVFSYPLPA-SIIPEINVCKYDPWDLPGNC--DLQERHFFSPKEAKYRNGNRMNRTTKCGYWKATGSDK 100
                          79****************************.89***************554..66899******************************** PP

                  NAM  91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++ s+  ++  vg++ktL+fy+g++pkg++t+Wv+heyrl
  Glyma.08G009700.1.p 101 RISSStcNNGIVGVRKTLIFYEGKSPKGSRTHWVLHEYRL 140
                          ***99888888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-5310170IPR003441NAC domain
PROSITE profilePS5100552.00514170IPR003441NAC domain
PfamPF023659.7E-2415140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEKLNFVKNG VSKLPPGFRF QPTDEELVFQ YLKCKVFSYP LPASIIPEIN VCKYDPWDLP  60
GNCDLQERHF FSPKEAKYRN GNRMNRTTKC GYWKATGSDK RISSSTCNNG IVGVRKTLIF  120
YEGKSPKGSR THWVLHEYRL VSVETGAANS SHNNYVNEIG DWVLCRLSMK KRSLESDGSA  180
THQKHRQNNT VQTSRPRLMF DFMMVGKTNS STSSSCSSSS NIMEVSSNAS DHEETSGYAH  240
F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-481417517170NO APICAL MERISTEM PROTEIN
1ut4_B9e-481417517170NO APICAL MERISTEM PROTEIN
1ut7_A9e-481417517170NO APICAL MERISTEM PROTEIN
1ut7_B9e-481417517170NO APICAL MERISTEM PROTEIN
4dul_A9e-481417517170NAC domain-containing protein 19
4dul_B9e-481417517170NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.191170.0pod
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G009700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532396.10.0NAC domain-containing protein 83
RefseqXP_028246943.10.0NAC domain-containing protein 83-like
SwissprotQ9FY931e-68NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A445J8H20.0A0A445J8H2_GLYSO; NAC domain-containing protein 83
TrEMBLI1KP450.0I1KP45_SOYBN; Uncharacterized protein
STRINGGLYMA08G01280.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.14e-70NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]