PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G014900.1.p
Common NameGLYMA_08G014900, LOC100808167
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 631aa    MW: 70777.8 Da    PI: 6.5181
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G014900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.75.8e-15432478455
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +h + ErrRR+++N++f +Lr+++P+ +      K +K++iL  A++Y+k+L+
  Glyma.08G014900.1.p 432 NHVMSERRRRAKLNERFLTLRSMVPSiS------KDDKVSILDDAIDYLKKLE 478
                          799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.5E-546190IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.034428477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.17E-15431482No hitNo description
SuperFamilySSF474595.63E-18431487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-18432487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-12432478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-15434483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.017562630IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MVPENLKKQL ALAVRSIHWS YAIFWTDSTT QPGVLSWGEG YYNGDIKTRK TSQGVELNSD  60
QIGLQRSEQL RELFKSLKTV EVTPQTKRPS AAALSPEDLT DAEWYYLVCM SFIFNIGQGL  120
PGRTLAKGQP IWLNNAHSSD CKIFSRSLLA KSASIETVVC FPFREGVIEL GTTEQVPEDL  180
SVIELIKTSF LNSLHANVPN KSVATLKSRN QEDLSYAAFD HNDYNVKSIP EVGYEIANTT  240
SPDGSSNAFQ ANQPLDETFM IESITNGTSQ VQNWQVIDDE LSNCVHNSMN SSDCISQTFA  300
CPENIASAPK SNNPSDPCAR NFQKCNNPKM TLVDPRSDDL HYQRVLSTLI KSSDQLLMGM  360
HLQKFPQESS FVSWRKEQPM DCKWPRAGTS QKLLKKVLFE VPQMHLDGLH ESQEENDYKE  420
GMRVEADENG MNHVMSERRR RAKLNERFLT LRSMVPSISK DDKVSILDDA IDYLKKLERR  480
VKELEAHRVV TDIETGTRRS PQDTVERTSD HYFRKNNNGK KPGMKKRKAC GVDETEKEIN  540
SDALKGSYAN DVTVSTSDNE IVIELKCPSK AGRLLEIMEA INSFNIDFSS VQSTEADGNL  600
YLTIKSVLTG PSVATTKRIK QALQKLASKC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-1441907192Transcription factor MYC3
4rqw_B5e-1441907192Transcription factor MYC3
4rru_A1e-13417846219Transcription factor MYC3
4rs9_A5e-1441907192Transcription factor MYC3
4ywc_A1e-13417846219Transcription factor MYC3
4ywc_B1e-13417846219Transcription factor MYC3
4yz6_A5e-1441907192Transcription factor MYC3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.618450.0epicotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G014900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532789.10.0transcription factor EGL1
TrEMBLI1KPA90.0I1KPA9_SOYBN; Uncharacterized protein
STRINGGLYMA08G01810.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Representative plantOGRP24471429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.10.0bHLH family protein