PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G035000.1.p
Common NameGLYMA_08G035000, LOC100778201
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 243aa    MW: 25893.5 Da    PI: 4.9685
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G035000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19e-184595155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + ++GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Glyma.08G035000.1.p 45 PVFRGVRMRA-WGKWVSEIREPRK---KNRIWLGTFATAEMAARAHDVAALAIKG 95
                         579****998.**********854...59**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-124595IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-2146104IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-3146104IPR001471AP2/ERF domain
SMARTSM003807.0E-3646109IPR001471AP2/ERF domain
PROSITE profilePS5103222.60346103IPR001471AP2/ERF domain
PRINTSPR003677.7E-104758IPR001471AP2/ERF domain
CDDcd000183.79E-3147105No hitNo description
PRINTSPR003677.7E-106985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAELPSSEAS SSSASSRKHS SSEAHLPAPD QKRPKQARDS SSKHPVFRGV RMRAWGKWVS  60
EIREPRKKNR IWLGTFATAE MAARAHDVAA LAIKGNSAIL NFPELAASLP RPDSNSPRDV  120
QAAAAKAAAM EVNDVPTTPS SSSSSASLSL SQSSSWSSLA VSSSSGDGPS TPEELGEIVE  180
LPSLGTSFEI PDPSGELVYL DPWPYSQAWS HGIYDESEGY FIGDSETESM ILCGFEGSLW  240
QH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1837103572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12835PDQKRPKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.616990.0flower| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G035000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0920690.0BT092069.1 Soybean clone JCVI-FLGm-9B10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003530573.11e-173ethylene-responsive transcription factor TINY
SwissprotQ9LYD32e-55DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLI1KPY11e-172I1KPY1_SOYBN; Uncharacterized protein
STRINGGLYMA08G03910.11e-173(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.18e-50ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]