PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.08G042900.1.p

Common Name

GLYMA_08G042900, LOC100779271

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 465aa MW: 51383.1 Da PI: 5.9984

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.08G042900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00091	110	129	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp+C+++F++ ++ H Glyma.08G042900.1.p 110 FECPICKQPFRSEEEVSAHV 129 89***********9999996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd09212	8.19E-20	169	259	No hit	No description
SuperFamily	SSF143503	7.06E-18	174	259	IPR018997	PUB domain
SMART	SM00580	1.6E-20	176	243	IPR018997	PUB domain
Pfam	PF09409	3.0E-16	176	248	IPR018997	PUB domain
SuperFamily	SSF54236	1.78E-13	325	437	IPR029071	Ubiquitin-related domain
Gene3D	G3DSA:3.10.20.90	1.5E-8	352	437	No hit	No description
PROSITE profile	PS50033	10.578	353	437	IPR001012	UBX domain
Pfam	PF00789	1.0E-4	354	404	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MDDVKDKVKG FMKKVNNPFS SSSSAKFKGQ GRVLGSSSST PANSNPTPRP YPNSQKPSSS 60 SAVTNPKPSP QKTEQNKTTD KPRKDDGFDP FDSLVTNSNR SQNGYSLNVF ECPICKQPFR 120 SEEEVSAHVD GCLNNPVERG SDDGNGVSES DGGSNDTNTE LEVCVGTYIS GKPSEGSVDV 180 ILKLLRNIGR EPENVKFRRI RMNNPKIKEA VGDVAGGVEL LSFVGFELRE ENGETWAVME 240 FPSEEQIKFI QRAIVLLESQ LVQQGPPKRD DLPSATSTEM GPKAETKPVD RQVKVFFAVP 300 ESVAAKIELP DSFYKLSAEE VRREAELRRK KIADSQLLIP KSLKEKQAKV SRKRYTKTII 360 RIQFPDGVVL QGVFAPWETT IALYEFVSSA LKEPGLEFEL MHPVLIQRRV IPHFPKAGEN 420 AKTIEEEDLV PSALIKFKPL ETDSVVFTGL RNELLEISEP LVNG*

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MDDVKDKVKG FMKKVNNPFS SSSSAKFKGQ GRVLGSSSST PANSNPTPRP YPNSQKPSSS  60
SAVTNPKPSP QKTEQNKTTD KPRKDDGFDP FDSLVTNSNR SQNGYSLNVF ECPICKQPFR  120
SEEEVSAHVD GCLNNPVERG SDDGNGVSES DGGSNDTNTE LEVCVGTYIS GKPSEGSVDV  180
ILKLLRNIGR EPENVKFRRI RMNNPKIKEA VGDVAGGVEL LSFVGFELRE ENGETWAVME  240
FPSEEQIKFI QRAIVLLESQ LVQQGPPKRD DLPSATSTEM GPKAETKPVD RQVKVFFAVP  300
ESVAAKIELP DSFYKLSAEE VRREAELRRK KIADSQLLIP KSLKEKQAKV SRKRYTKTII  360
RIQFPDGVVL QGVFAPWETT IALYEFVSSA LKEPGLEFEL MHPVLIQRRV IPHFPKAGEN  420
AKTIEEEDLV PSALIKFKPL ETDSVVFTGL RNELLEISEP LVNG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ifw_A	2e-14	304	437	19	146	Tether containing UBX domain for GLUT4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.60409	0.0	leaf\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.08G042900.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235390	0.0	AC235390.1 Glycine max strain Williams 82 clone GM_WBb0116B02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003530725.1	0.0	plant UBX domain-containing protein 2
Refseq	XP_006584861.1	0.0	plant UBX domain-containing protein 2
Swissprot	Q9ZU93	0.0	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	I1KQ73	0.0	I1KQ73_SOYBN; Uncharacterized protein
STRING	GLYMA08G04760.6	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8944	25	29
Representative plant	OGRP6047	2	3

Link Out ? help Back to Top
Phytozome	Glyma.08G042900.1.p
Entrez Gene	100779271

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]