PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G051800.1.p
Common NameGLYMA_08G051800, LOC100794175
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 326aa    MW: 36148.9 Da    PI: 10.0697
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G051800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.91e-2142132186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                          +W+ +e+laLi+a+r+++ +l+rg+lk+++W+ev++++          ++p+qC++k+e+l+kry+ + +++++   s+  s++++f+ +
  Glyma.08G051800.1.p  42 CWSPDETLALIDAYRDKWYSLGRGNLKATHWQEVADAVssrcPNASPPKTPVQCRHKMEKLRKRYRTEIQRARSLpVSRFNSSWAHFKLM 131
                          7********************************9999966656677799*************************97799999******99 PP

             trihelix  86 e 86 
                          +
  Glyma.08G051800.1.p 132 D 132
                          7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014477.32E-5818No hitNo description
PfamPF138372.0E-2141134No hitNo description
PROSITE profilePS500906.12143103IPR017877Myb-like domain
SMARTSM005953.5E-1150139IPR006578MADF domain
SuperFamilySSF1014477.32E-57077No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MDDASSSPPP PPPPPDPPSA VPLSLVPLPA PPSSTRRLPP PCWSPDETLA LIDAYRDKWY  60
SLGRGNLKAT HWQEVADAVS SRCPNASPPK TPVQCRHKME KLRKRYRTEI QRARSLPVSR  120
FNSSWAHFKL MDSMEKGPSP VKPDINDSDH NNTDNDDDDD DAGQDLYHHQ INHNGHTRSL  180
NKLYRNGFPG SGGGAGGFRI RIPTGLSAPQ QQHPGSASKV FGKVGNQRFS PNLNQNPNPN  240
LGKKRERDPV GEVVAAIKVL GDGFVRMEQM KMEMAREIET MRMEMEMKRT EMILESQQRI  300
VEAFAKAVSE KNRKKKPKTV PSASG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.137920.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G051800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532535.10.0trihelix transcription factor ASIL2
RefseqXP_028242912.10.0trihelix transcription factor ASIL2-like
TrEMBLA0A445JA550.0A0A445JA55_GLYSO; Protein FIP2 isoform A
TrEMBLI1KQI50.0I1KQI5_SOYBN; Uncharacterized protein
STRINGGLYMA08G05630.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46382838
Representative plantOGRP40591122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.14e-53Trihelix family protein