PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G056700.1.p
Common NameGLYMA_08G056700, LOC100801620
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 153aa    MW: 16913.9 Da    PI: 9.3111
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G056700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer86.23.4e-271765457
          ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                          +Y+eCl+NhAaslG++a+DGCgEf+ + g    a +l+CaACgCHRnFHR+ +
  Glyma.08G056700.1.p 17 SVYRECLRNHAASLGSYATDGCGEFTVD-G----AGGLQCAACGCHRNFHRKVK 65
                         68*************************8.3....569**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.0E-231864IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.5861964IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.8E-211963IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-101963IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.607.7E-2770137IPR009057Homeodomain-like
SuperFamilySSF466892.33E-1471135IPR009057Homeodomain-like
TIGRFAMsTIGR015656.3E-2977135IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MEGGSGGGER EKWNSVSVYR ECLRNHAASL GSYATDGCGE FTVDGAGGLQ CAACGCHRNF  60
HRKVKYPVAE HEEYGGKKRF RSKFTADQKE KMLGFAEKLG WKLQRKDLND EIERFCRSVG  120
VSRQVFKVWM HNHKNSSSSS SSTPANVSSL TQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-23781401879ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.560660.0cotyledon
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G056700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150344e-62AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532548.11e-110zinc-finger homeodomain protein 5
RefseqXP_028247263.11e-110zinc-finger homeodomain protein 5-like isoform X1
RefseqXP_028247264.11e-110zinc-finger homeodomain protein 5-like isoform X2
SwissprotQ9SB618e-38ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A445JAF81e-109A0A445JAF8_GLYSO; Zinc-finger homeodomain protein 2
TrEMBLI1KQN01e-109I1KQN0_SOYBN; Uncharacterized protein
STRINGGLYMA08G06120.11e-110(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79822844
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-29homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]