PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G061300.1.p
Common NameGLYMA_08G061300, LOC100813887
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 502aa    MW: 54758.8 Da    PI: 6.9039
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G061300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.000133954271754
                          HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           ++   L++l+ +      +K + a++L +A+eYIk L
  Glyma.08G061300.1.p 395 GDRVTALQQLVSPF-----GKTDTASVLHEAIEYIKFL 427
                          55666677777776.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.985378427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-8388438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.81E-5388431No hitNo description
SuperFamilySSF474593.53E-11388445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MAEEFQARIC GENLWSSTTI DSTRSSVLFP LSSSSSSSIS SSPCSVAANN NDAGNYSTRG  60
TSDTDLKATK CCAEDTNGNN LVSDTTYLGF VDLQKPHNKS ESAASGSGGM LIDSTLQMMG  120
FGLTSSTSSS ENWNQPLLFR CNGRAESNFH SLIQEETGMD SSNSQIHRDW IPKSFSSGGG  180
NQQIDYNNFK PLLLNKQEFS LDHHSLSSLT TTGLSSNHGF PIGSASSYGN PSTLQSLYDP  240
NYNPHPQHNS LFTNRPMFYS SKACYGTPCT ELPQTWSKVS TFLKPTTTTI AKQQHPNIGL  300
HFSNNTPFWN ASAEALHDIR VGTFASSQSQ YHRPTFDGEK PNCPSTLLNK FNSEKTLESA  360
SMMTKKNVCE PALKRPRIET SSPLPTFKVR KEKLGDRVTA LQQLVSPFGK TDTASVLHEA  420
IEYIKFLHDQ VNVLSTSYMK NGAPIQHQQG CDDLKDSEGP QQDLKSKGLC LVPISSTFPV  480
ATEATSAELW TPTFRSGALL R*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.386951e-98epicotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G061300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532569.10.0transcription factor bHLH112
TrEMBLK7L5740.0K7L574_SOYBN; Uncharacterized protein
STRINGGLYMA08G06575.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Representative plantOGRP31351129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.19e-51bHLH family protein