PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G061300.2.p
Common NameGLYMA_08G061300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 464aa    MW: 50478.8 Da    PI: 6.5568
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G061300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH149e-053523891254
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++ ++   L++l+ +      +K + a++L +A+eYIk L
  Glyma.08G061300.2.p 352 RKEKLGDRVTALQQLVSPF-----GKTDTASVLHEAIEYIKFL 389
                          5566666777788888776.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.966340389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0044346395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-12346407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-8348400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.19E-5350393No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MAEEFQARIC GENLWSSTTI DSTRSSVLFP LSSSSSSSIS SSPCSVAANN NDAGNYSTRG  60
TSDTDLKATK CCAEDTNGNN LVSDTTYLGF VDLQKPHNKS ESAASGSGGM LIDSTLQMMG  120
FGLTSSTSSS ENWNQPLLFR CNGRAESNFH SLIQEETGMD SSNSQIHRDW IPKSFSSGGG  180
NQQIDYNNFK PLLLNKQEFS LDHHSLSSLT TTGLSSNHGF PIGSASSYGN PSTLQSLYDP  240
NYNPHPQHNS LFTNRPMFYS SKACYGTPCT ELPQTWSKVS TFLKPTTTTI AKQQHPNIGL  300
HFSNNTPFWN ASAEALHDIR VGTFASSQSQ YHRPTFDGEK PNCPSTLLNK VRKEKLGDRV  360
TALQQLVSPF GKTDTASVLH EAIEYIKFLH DQVNVLSTSY MKNGAPIQHQ QGCDDLKDSE  420
GPQQDLKSKG LCLVPISSTF PVATEATSAE LWTPTFRSGA LLR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.386956e-82epicotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G061300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532569.10.0transcription factor bHLH112
TrEMBLA0A0R0ILL00.0A0A0R0ILL0_SOYBN; Uncharacterized protein
STRINGGLYMA08G06575.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-41bHLH family protein