PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G063900.1.p
Common NameGLYMA_08G063900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 196aa    MW: 22144 Da    PI: 7.3234
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G063900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.7e-12129175354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          + h ++Er+RR+++ ++f  L  l+P +     +K +Ka++L  A++Y+k+L
  Glyma.08G063900.1.p 129 QDHIIAERKRREKLSQRFIALSALVPGL-----QKTDKASVLGDAIKYLKQL 175
                          5799***********************9.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.12126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-16128186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-16130186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9130175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.86E-12131175No hitNo description
SMARTSM003531.8E-12132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MEDPTFLHQW HLSSIDDLNL LPIAAAFGET LQHHAFTYPN SNPKTSMETA LADIERDTKH  60
HNKNNITQTS SETQFVSFPN LFSFVDSNQT TPPDSISQGT LLGNHNNYVF KACQEAKKTG  120
KRYKHSQPQD HIIAERKRRE KLSQRFIALS ALVPGLQKTD KASVLGDAIK YLKQLPEKVK  180
ALEEEQIMKE ILELC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-15125187365Transcription factor MYC2
5gnj_B1e-15125187365Transcription factor MYC2
5gnj_E1e-15125187365Transcription factor MYC2
5gnj_F1e-15125187365Transcription factor MYC2
5gnj_G1e-15125187365Transcription factor MYC2
5gnj_I1e-15125187365Transcription factor MYC2
5gnj_M1e-15125187365Transcription factor MYC2
5gnj_N1e-15125187365Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134139ERKRRE
2135140RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G063900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150344e-44AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529273.11e-114transcription factor bHLH19 isoform X2
RefseqXP_014633046.11e-114transcription factor bHLH19 isoform X1
TrEMBLA0A0R0INZ01e-144A0A0R0INZ0_SOYBN; Uncharacterized protein
STRINGGLYMA07G30420.21e-114(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-24bHLH family protein